SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01410 | AT | Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr5:172576-173505 REVERSE LENGTH=309 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0006982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to lipid hydroperoxide | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0010335 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to non-ionic osmotic stress | SoyBase | N/A | ISS |
| GO:0015994 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0042819 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin B6 biosynthetic process | SoyBase | N/A | ISS |
| GO:0042823 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxal phosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0012505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
| KOG1606 | KOG | Stationary phase-induced protein, SOR/SNZ family | JGI | ISS | |
| PTHR22854 | Panther | TRYPTOPHAN BIOSYNTHESIS PROTEIN | JGI | ISS | |
| PTHR22854:SF9 | Panther | JGI | ISS | ||
| PF01680 | PFAM | SOR/SNZ family | JGI | ISS | |
| UniRef100_I1M1P1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1P1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q45FF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyridoxine biosynthesis protein n=1 Tax=Glycine max RepID=Q45FF0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g29700 not represented in the dataset |
Glyma13g29700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g09350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g225000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g29700.1 sequence type=CDS gene model=Glyma13g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGATCAGGATCCGGTGTGGTTACAGTGTACGGCAACGGTGCAATCACCGAGACCAAGAAGTCCCCCTTCTCCGTTAAAGTGGGCCTGGCCCAGATGCTCCGCGGCGGCGTCATCATGGACGTCGTCAACGCGGAACAGGCCCGCATCGCGGAGGAGGCCGGTGCCTGCGCGGTCATGGCCCTTGAGCGTGTCCCCGCCGACATCCGTGCCCAGGGCGGCGTGGCCCGCATGAGCGACCCGCAGCTCATCAAGGACATCAAGCGGGCCGTCACCATCCCCGTCATGGCCAAGGCCCGCATCGGCCACTTCGTCGAGGCCCAGATCCTCGAGGCCATCGGCATCGACTACGTCGACGAGAGCGAGGTCCTCACCCTCGCCGACGACGCCAACCACATCAACAAACACAACTTCCGCATCCCCTTCGTCTGTGGCTGCCGCAACCTCGGCGAGGCCCTCCGCCGTATCCGCGAGGGCGCCGCCATGATCCGCACCAAGGGCGAGGCCGGCACCGGCAACATCATCGAGGCCGTTCGCCACGTGCGTTCCGTCATGAGCGACATTAGGGTTCTCCGCAACATGGACGACGACGAGGTCTTCACCTTCGCCAAGAGCATCGCTGCGCCCTACGACCTCGTCATGCAGACCAAACAGCTCGGCCGCCTCCCCGTCGTCCACTTCGCCGCCGGCGGAGTCGCCACCCCCGCCGACGCCGCGCTCATGATGCAGCTCGGATGCGACGGCGTCTTCGTCGGCTCCGGCGTCTTCAAGAGCGGCGATCCCGCGAAGCGTGCGAGGGCAATTGTTCAGGCCGTGACTCACTACAGTGACCCCGAGGTTTTGGCAGAGGTTAGTTGTGGATTGGGGGAAGCCATGGTTGGTATCAATTTGACCGATGACAAGGTTGAGAGGTTCGCCAATCGCTCTGAATGA
>Glyma13g29700.1 sequence type=predicted peptide gene model=Glyma13g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGSGSGVVTVYGNGAITETKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKDIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEVLAEVSCGLGEAMVGINLTDDKVERFANRSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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