SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60500 | AT | Annotation by Michelle Graham. TAIR10: Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669 | SoyBase | E_val: 0 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0446 | KOG | Vacuolar sorting protein VPS1, dynamin, and related proteins | JGI | ISS | |
| PTHR11566 | Panther | DYNAMIN | JGI | ISS | |
| PTHR11566:SF22 | Panther | DYNAMIN-RELATED GTPASE | JGI | ISS | |
| PF00350 | PFAM | Dynamin family | JGI | ISS | |
| PF01031 | PFAM | Dynamin central region | JGI | ISS | |
| PF02212 | PFAM | Dynamin GTPase effector domain | JGI | ISS | |
| UniRef100_G7L7C0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Interferon-induced GTP-binding protein Mx n=1 Tax=Medicago truncatula RepID=G7L7C0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M1N3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M1N3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g29630 not represented in the dataset |
Glyma13g29630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g224400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g29630.2 sequence type=CDS gene model=Glyma13g29630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGGAACCTTTCGCTTTGGCCTTGATCATGCCACTCCAAAACCCGAGCCAAACGAGGCCAAACATGTTGCACCCATTGTGTCCTCTTACAACGAGCGCATACGTCCTGTTCTTGATGCTGTCGAGAACCTGAGGCGCCTCAACATCACCAAAGAAGGGATACAGCTTCCAACCATAGTTGTTGTTGGTGACCAGTCTTCTGGAAAATCCAGTGTCCTAGAATCTCTGGCTGGAATCAGCTTACCCCGTGGACAAGGTATCTGCACAAGGGTTCCCTTGATCATGAGGCTCCAAAACCACTCACTTCCCAAACCCGAGTTGGTGCTAGAGTATAATGCCAAAATCGTGTCCACAGATGAGGCTCAAGTCTCTGATGCTATCCGAGTTGCCACGGATGAGCTTGCAGGGGGTGGGAAAGGAATTTCCAACACCCCATTAACTCTTGTGGTGAAGAAGGACGGTGTTCCTGATCTCACTATGGTTGATCTTCCAGGCATCACTCGCGTGCCAGTTCATGGTCAACCTGAGGATATATATGACCAGATTAAGGATATAATTATGGAGTATATAAGGCCTGAAGAGAGCATCATTCTCAATGTTTTATCTGCCACTGTTGATTTCTCTACTTGTGAGTCCATTAGGATGTCACAAGGTGTTGACAAAACCGGTGAGAGGACTCTTGCTGTGGTCACAAAAGCTGATAAGGCTCCTGAGGGCTTGCATGAGAAGGTAACTGCTGATGATGTCAACATTGGACTTGGCTATGTTTGTGTCAGAAATCGCATTGGGGATGAGTCCTATGAAGATGCTCGAGCAGAAGAAGTCAACCTATTCAGGACTCATACACTTTTGTCCAAAATAGACAAGTCCATTGTGGGGGTTCCAGTTTTGGCACAAAAGCTGGTTCAACTTCAAGCGGCTAGTATTTCCAAAATACTGCCTGAAATTGTTAAGAAGATCAACGACAAGCTCGGTTCTCAGCTTTCTGAGCTGGACAAATTCCCCAGGAAACTTACTTCTGTGCCTAATGCAATGTCTGCTTTCATGCATATCATTGGGTTGGCAAAAGAGTCACTGAGGAAGATTCTTCTCAGAGGAGAATTTGATGAGTACCCTGATGACAAGCACATGCATTGCACTGCTCGCCTTGTTGATATGCTGGATCAGTACTCAAATGATCTTTACAAGGGTCCTGAAAGTGATGCTGGTGAGAAGTTTTTGATGGAAGAAATTAAGGTTCTAGAAGAAGCCAAGTGGATTGGGCTCCCAAACTTCATGCCACGCAGTGCTTTTCTTACCCTCTTACAGAATAAAGTGAGAGCAATTTCAAGCATGCCAATTGAGTTCACAGTCAAGGTGTGGGACTATCTTGAGGAAGTGGTGGTTGCTGTTCTGAAGCGTCACTCAGAACACTACCACCAACTTCAGACAAGTACAAAACGAGCAGGGAAGAACCTCATTGCTAAGATGAAGGAGAATTCTATGAAATATGTGATGGAGGTTGTGGAAATGGAAAAGCTAACTGATTACACTAGTAATCCTGAATACATGAGTGAGTATAACGAGCTAATGGCCAACCAGGATGAATTCGTGGAGAAAGTTAATACAGGCAACTATCATGAAGTTGCCCTTGATGGTTTTGAGCAGGCGATTAAGGTTGGTCATCTGAGTCAGTACTCAACTTTACTTCCGCAGGCATTTGACTTGAAAATGAGACTGAGAGCATACTGGAAGATTGTGCTTCGGAGGCTGATCGACGGCACTGCCCTGCATCTGCAACTCAGCATTTTCAACCTTGTTGACAAGGATCTGGGAGATGAGATTGTGAAGGATATGATGTCTCCATATGCAGGTGGAATTGAGAAGTTGTTGGAGGAAGCTCCTTCAGTTTCAATGAAGCGTGACAAACTCAATAGGAGCATTAAAGTTCTGAGAGAAAGCAAAGAAGTCGTGGCTAACATAATGGACAAAATTTCTAGCTATGATGATTAG
>Glyma13g29630.2 sequence type=predicted peptide gene model=Glyma13g29630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEGTFRFGLDHATPKPEPNEAKHVAPIVSSYNERIRPVLDAVENLRRLNITKEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLIMRLQNHSLPKPELVLEYNAKIVSTDEAQVSDAIRVATDELAGGGKGISNTPLTLVVKKDGVPDLTMVDLPGITRVPVHGQPEDIYDQIKDIIMEYIRPEESIILNVLSATVDFSTCESIRMSQGVDKTGERTLAVVTKADKAPEGLHEKVTADDVNIGLGYVCVRNRIGDESYEDARAEEVNLFRTHTLLSKIDKSIVGVPVLAQKLVQLQAASISKILPEIVKKINDKLGSQLSELDKFPRKLTSVPNAMSAFMHIIGLAKESLRKILLRGEFDEYPDDKHMHCTARLVDMLDQYSNDLYKGPESDAGEKFLMEEIKVLEEAKWIGLPNFMPRSAFLTLLQNKVRAISSMPIEFTVKVWDYLEEVVVAVLKRHSEHYHQLQTSTKRAGKNLIAKMKENSMKYVMEVVEMEKLTDYTSNPEYMSEYNELMANQDEFVEKVNTGNYHEVALDGFEQAIKVGHLSQYSTLLPQAFDLKMRLRAYWKIVLRRLIDGTALHLQLSIFNLVDKDLGDEIVKDMMSPYAGGIEKLLEEAPSVSMKRDKLNRSIKVLRESKEVVANIMDKISSYDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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