Glyma13g29600 - SoyBase

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Report for Sequence Feature Glyma13g29600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32486516
stop:	32489020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58310	AT	Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein \| chr1:21631947-21633642 FORWARD LENGTH=505	SoyBase	E_val: 6.00E-16	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_A2Q620	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-like F-box; Agenet n=1 Tax=Medicago truncatula RepID=A2Q620_MEDTR	SoyBase	E_val: 6.00E-83	ISS
UniRef100_I1M1N0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M1N0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g29600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g224200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g29600

Limit To All Plant Sequences

>Glyma13g29600.3   sequence type=transcript   gene model=Glyma13g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTGAAAAATATTATTATGTTGCAAAAATTATTAAGAGGAAAATGCTTGCGCAACATTTTGGGTTCATGTACAGAAAGGAGGATGAGACGACGTATGAGGATAAGAAAAACTAGACAAGCTTATGGTAAAAATGAAGACAACGAGGACTGGATCAGTGAGAGAGAAGTTGATGGTGAAACTGAGGACGATGGGGACATGATCAGTGAGAGGAAAAGAAACATTAGAGAAGTTGATGCTGAAAATGAAGACAACGGAGATAGGATCGGTAAAAGGAAAAGAAACATTAGAGAAGTTGATGCTGAAAATGAACACAATGGAGACAGAATCAGTGAGAGGAAAAAAAACATCGCTAGAGAAGTTGATGGTGAAAATGAAGACCACAGGCCAGACAGGATCAGTGCCTTGCCTGATAGCCTTCTGTTCCACATGATAAATTTTATGGACACAAAATCTGCTGTTCAAACTTGTGTCCTGTCTAAAAGATGGAACGACCTTTCCAAATGTCTCACTAATCTCACATTTAATTCTGATCTCCCAAGCGAAGGCCTGGATAGAAGTTTTAAGAAATTTGAGTCTTGGGTTTTGTCTAGTCGCGATGACTCATATCCCCTACTTAATCTTACCATTGAGAGTTGGATCGATGCTGATGTTCAAGATAGGGTCATAAAATATGCTCTGTTGCACAATGTCCAGAAGTTGAAAATGAATATAAATTCAACAACCTATAGACCCAATTTTAAGTCCCTCCCTTTAATCTTTCGCAGTCAGTCTTTGACATCTCTTGAGCTTTCCAATAAGTTGAGCCCTTCTAGGTTAAAACTTCCAAAATCTCTATGCTTGCCTGCATTGAAAAGCTTGCATCTTGCATATGTTACATTCACCGCAAGTGACAAAGACCGTGTTGAGCCCTTCTCAAACTGTCATGTGTTGAATACTTTGGTCCTGAGAAATTTTTCTTTGAGTGCACAAGTCCTCAGCATATCTAATTCTACCCTTTCCAGTTTGACAATATTTGAAGGACAAGCTTGTTCAATTGTGCTTTCTACTCCAAATCTTAGTTCTTTTTCCATCACGGGTTCGGTTGGTCATCAACTCTCCTCCACATCCGATCTTTCTTTTCTTGGAGAAGTAAATATAAATATTTACATGCCTTGGAGTGAGACGAGTTTGGATGGAAAAAGTTCAATCATCATAAAATGGCTGGGAGTGCTTGCAAATGTAAAGATATTGACAATTGGTTTGTGTGCCATTCAAACAATACTACATGATCTCTTAAATCCCACTTCTATCAGAACTCAACCTCCGAAGTTTGTTAGATTGGAGTCGTTGAAAGTGAAGGTGGGCAACCCTTTATCTACCAAAAACACATCTGATGAGAAAGTAACCCGAGCAGTGGAGTACTTGCTTCAAAACTCTCCAATGCCCAGATTTGATATAATAAGAAGTGCTTAAATGATATCCCTGCTTAACTCTTTAGGTAGAGTTTTACGCAGTATCCAATTTTTGTCTATTTTATGCTTCCTTTCTTTTTGTCTTAAATACTTTTTTTACAGCTACTTGTAGGTTGCTGCTATATTCTAAGTGCCTGGTTTATAACGGATGTTATAGATTTATTTTATTTGACTTTGACAAATGGAAAATTTTAAACTTAAG

Coding sequences of Glyma13g29600

Limit To All Plant Sequences

>Glyma13g29600.1   sequence type=CDS   gene model=Glyma13g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGATCACGCACCAACTACAAGAAAGGAGGATGAGACGACGTATGAGGATAAGAAAAACTAGACAAGCTTATGGTAAAAATGAAGACAACGAGGACTGGATCAGTGAGAGAGAAGTTGATGGTGAAACTGAGGACGATGGGGACATGATCAGTGAGAGGAAAAGAAACATTAGAGAAGTTGATGCTGAAAATGAAGACAACGGAGATAGGATCGGTAAAAGGAAAAGAAACATTAGAGAAGTTGATGCTGAAAATGAACACAATGGAGACAGAATCAGTGAGAGGAAAAAAAACATCGCTAGAGAAGTTGATGGTGAAAATGAAGACCACAGGCCAGACAGGATCAGTGCCTTGCCTGATAGCCTTCTGTTCCACATGATAAATTTTATGGACACAAAATCTGCTGTTCAAACTTGTGTCCTGTCTAAAAGATGGAACGACCTTTCCAAATGTCTCACTAATCTCACATTTAATTCTGATCTCCCAAGCGAAGGCCTGGATAGAAGTTTTAAGAAATTTGAGTCTTGGGTTTTGTCTAGTCGCGATGACTCATATCCCCTACTTAATCTTACCATTGAGAGTTGGATCGATGCTGATGTTCAAGATAGGGTCATAAAATATGCTCTGTTGCACAATGTCCAGAAGTTGAAAATGAATATAAATTCAACAACCTATAGACCCAATTTTAAGTCCCTCCCTTTAATCTTTCGCAGTCAGTCTTTGACATCTCTTGAGCTTTCCAATAAGTTGAGCCCTTCTAGGTTAAAACTTCCAAAATCTCTATGCTTGCCTGCATTGAAAAGCTTGCATCTTGCATATGTTACATTCACCGCAAGTGACAAAGACCGTGTTGAGCCCTTCTCAAACTGTCATGTGTTGAATACTTTGGTCCTGAGAAATTTTTCTTTGAGTGCACAAGTCCTCAGCATATCTAATTCTACCCTTTCCAGTTTGACAATATTTGAAGGACAAGCTTGTTCAATTGTGCTTTCTACTCCAAATCTTAGTTCTTTTTCCATCACGGGTTCGGTTGGTCATCAACTCTCCTCCACATCCGATCTTTCTTTTCTTGGAGAAGTAAATATAAATATTTACATGCCTTGGAGTGAGACGAGTTTGGATGGAAAAAGTTCAATCATCATAAAATGGCTGGGAGTGCTTGCAAATGTAAAGATATTGACAATTGGTTTGTGTGCCATTCAAACAATACTACATGATCTCTTAAATCCCACTTCTATCAGAACTCAACCTCCGAAGTTTGTTAGATTGGAGTCGTTGAAAGTGAAGGTGGGCAACCCTTTATCTACCAAAAACACATCTGATGAGAAAGTAACCCGAGCAGTGGAGTACTTGCTTCAAAACTCTCCAATGCCCAGATTTGATATAATAAGAAGTGCTTAA

>Glyma13g29600.3   sequence type=CDS   gene model=Glyma13g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAAAAATTATTAAGAGGAAAATGCTTGCGCAACATTTTGGGTTCATGTACAGAAAGGAGGATGAGACGACGTATGAGGATAAGAAAAACTAGACAAGCTTATGGTAAAAATGAAGACAACGAGGACTGGATCAGTGAGAGAGAAGTTGATGGTGAAACTGAGGACGATGGGGACATGATCAGTGAGAGGAAAAGAAACATTAGAGAAGTTGATGCTGAAAATGAAGACAACGGAGATAGGATCGGTAAAAGGAAAAGAAACATTAGAGAAGTTGATGCTGAAAATGAACACAATGGAGACAGAATCAGTGAGAGGAAAAAAAACATCGCTAGAGAAGTTGATGGTGAAAATGAAGACCACAGGCCAGACAGGATCAGTGCCTTGCCTGATAGCCTTCTGTTCCACATGATAAATTTTATGGACACAAAATCTGCTGTTCAAACTTGTGTCCTGTCTAAAAGATGGAACGACCTTTCCAAATGTCTCACTAATCTCACATTTAATTCTGATCTCCCAAGCGAAGGCCTGGATAGAAGTTTTAAGAAATTTGAGTCTTGGGTTTTGTCTAGTCGCGATGACTCATATCCCCTACTTAATCTTACCATTGAGAGTTGGATCGATGCTGATGTTCAAGATAGGGTCATAAAATATGCTCTGTTGCACAATGTCCAGAAGTTGAAAATGAATATAAATTCAACAACCTATAGACCCAATTTTAAGTCCCTCCCTTTAATCTTTCGCAGTCAGTCTTTGACATCTCTTGAGCTTTCCAATAAGTTGAGCCCTTCTAGGTTAAAACTTCCAAAATCTCTATGCTTGCCTGCATTGAAAAGCTTGCATCTTGCATATGTTACATTCACCGCAAGTGACAAAGACCGTGTTGAGCCCTTCTCAAACTGTCATGTGTTGAATACTTTGGTCCTGAGAAATTTTTCTTTGAGTGCACAAGTCCTCAGCATATCTAATTCTACCCTTTCCAGTTTGACAATATTTGAAGGACAAGCTTGTTCAATTGTGCTTTCTACTCCAAATCTTAGTTCTTTTTCCATCACGGGTTCGGTTGGTCATCAACTCTCCTCCACATCCGATCTTTCTTTTCTTGGAGAAGTAAATATAAATATTTACATGCCTTGGAGTGAGACGAGTTTGGATGGAAAAAGTTCAATCATCATAAAATGGCTGGGAGTGCTTGCAAATGTAAAGATATTGACAATTGGTTTGTGTGCCATTCAAACAATACTACATGATCTCTTAAATCCCACTTCTATCAGAACTCAACCTCCGAAGTTTGTTAGATTGGAGTCGTTGAAAGTGAAGGTGGGCAACCCTTTATCTACCAAAAACACATCTGATGAGAAAGTAACCCGAGCAGTGGAGTACTTGCTTCAAAACTCTCCAATGCCCAGATTTGATATAATAAGAAGTGCTTAA

Predicted protein sequences of Glyma13g29600

Limit To All Plant Sequences

>Glyma13g29600.1   sequence type=predicted peptide   gene model=Glyma13g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWITHQLQERRMRRRMRIRKTRQAYGKNEDNEDWISEREVDGETEDDGDMISERKRNIREVDAENEDNGDRIGKRKRNIREVDAENEHNGDRISERKKNIAREVDGENEDHRPDRISALPDSLLFHMINFMDTKSAVQTCVLSKRWNDLSKCLTNLTFNSDLPSEGLDRSFKKFESWVLSSRDDSYPLLNLTIESWIDADVQDRVIKYALLHNVQKLKMNINSTTYRPNFKSLPLIFRSQSLTSLELSNKLSPSRLKLPKSLCLPALKSLHLAYVTFTASDKDRVEPFSNCHVLNTLVLRNFSLSAQVLSISNSTLSSLTIFEGQACSIVLSTPNLSSFSITGSVGHQLSSTSDLSFLGEVNINIYMPWSETSLDGKSSIIIKWLGVLANVKILTIGLCAIQTILHDLLNPTSIRTQPPKFVRLESLKVKVGNPLSTKNTSDEKVTRAVEYLLQNSPMPRFDIIRSA*

>Glyma13g29600.3   sequence type=predicted peptide   gene model=Glyma13g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQKLLRGKCLRNILGSCTERRMRRRMRIRKTRQAYGKNEDNEDWISEREVDGETEDDGDMISERKRNIREVDAENEDNGDRIGKRKRNIREVDAENEHNGDRISERKKNIAREVDGENEDHRPDRISALPDSLLFHMINFMDTKSAVQTCVLSKRWNDLSKCLTNLTFNSDLPSEGLDRSFKKFESWVLSSRDDSYPLLNLTIESWIDADVQDRVIKYALLHNVQKLKMNINSTTYRPNFKSLPLIFRSQSLTSLELSNKLSPSRLKLPKSLCLPALKSLHLAYVTFTASDKDRVEPFSNCHVLNTLVLRNFSLSAQVLSISNSTLSSLTIFEGQACSIVLSTPNLSSFSITGSVGHQLSSTSDLSFLGEVNINIYMPWSETSLDGKSSIIIKWLGVLANVKILTIGLCAIQTILHDLLNPTSIRTQPPKFVRLESLKVKVGNPLSTKNTSDEKVTRAVEYLLQNSPMPRFDIIRSA*

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