Glyma13g29580 - SoyBase

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Report for Sequence Feature Glyma13g29580

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32473031
stop:	32474833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16030	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 70B \| chr1:5502386-5504326 REVERSE LENGTH=646	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009615	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to virus	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0100	KOG	Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily	JGI		ISS
PTHR19375	Panther	HEAT SHOCK PROTEIN 70KDA	JGI		ISS
PF00012	PFAM	Hsp70 protein	JGI		ISS
UniRef100_G7ILM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat-shock protein n=1 Tax=Medicago truncatula RepID=G7ILM0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M1M8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1M8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g29580 not represented in the dataset	Glyma13g29580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29580

Paralog	Evidence	Comments
Glyma15g09430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g224000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29580

Limit To All Plant Sequences

>Glyma13g29580.1   sequence type=CDS   gene model=Glyma13g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCGGAAATGTCAAAGCTATAGGCATTGACTTGGGAACAACCTATAGCTGCGTGGCAGTGTGGCAACACAACCACGTCGAGGTCATTCCCAATGACCAAGGCAACCGCACAACCCCTTCCTACGTTGCCTTCACCGACACCCAAAGGTTGTTGGGTGACGCTGCCATCAACCAGCGATCCATGAACCCACAAAACACCGTCTTTGACGCCAAACGTTTGATAGGTCGCAGATTCTCCGACCAATCCGTCCAGCAAGACATGAAGCTCTGGCCTTTTAAGGTTGTCCCTGGAAACAGAGACAAGCCCATGATTTCTAGACAAGCCACCAAGGATGCCGGGAAAATCGCGGGTTTGAACGTGTTGAGGATCATCAACGAGCCAACCGCAGCTGCTATTGCTTATGGTTTGAACAAGAAAGGGTGGAGAGAAGGAATGTTTAAGGTTAAGGCCACGGTGGGAGATACCCATTTGGGAGGTGTTGACTTTGATAACAAAATGGTTGACTATCTTGTGAGTATTTTCAAGAGGAGGTACAAGAAGGACATTGGTGAAAATCCCAAAGCTCTTGGAAGGTTGAGGTCAGCGTGTGAGAAAGCTAAGAGGATACTCTCTTCAAGTTCTCAAACCACTATTGAGCTTGATTCTTTATGTGGGGGGGTTGATTTACATGCAAATTTTTCAAGGGCCTTGTTCGAGGAATTGAACAAGGACTTGTTCATGAAGTGTATGGAGACGGTGGAGAAGTGCCTCAAGGAGGCAAGGATTGCTAAAAGTCAAGTTCATGAGTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGGTGCAGCAACTTTTGAAGGACATGTTCAGTGTTAATGGTAACAAGGAGCTTTGCAAAAGCATCAACCCTGATGAGGCCGTGGCGTATGGTGCGGCGGTTCAGGCGGCGATTTTGAGTGGCGAAGGAGACAAGAAGGTGGAGGATTTGTTGCTGCTGGATGTGATGCCGCTTAGTCTTGGAATTGAGACTGATGGTGGTGAGATGTCAGTGTTGATTCCCAAGAACACCATGATCCCCACCAAGAGGGAGAGTGTTTTCTCCACGTTTTCTGATAATCAAACAAGCGTTTTGATCAAAGTTTTCGAAGGGGAGCGAGCGAAGACAGAGGATAACTTCCTTCTTGGGAAGTTTGAGCTTTCTGGTTTCACTCCATCGCCAAGGGGAGTTCCACAGATCAATGTTGGGTTTGATGTTGATGTTGATGGCATTGTGGAAGTCACTGCTAGAGATAGGAGCACGGGGCTGAAGAAGAAGATCACGATCAGCAACAAGCATGGGAGGTTGAGTCCTGAAGAGATGAGGAGAATGGTGAGAGATGCAGTGAGGTATAAGGCAGAGGATGAGGAGGTGAGGAACAAGGTGAGGATAAAAAACTTGCTTGAGAATTATGCTTTTGAAATGAGGGACAGAGTGAAGAACCTTGAGAAGGTTGTGGAGGAGACCATAGAATGGCTTGACAGAAACCAATTGGCTGAAACTGATGAGTTTGAGTACAAGAGGCAGGAGTTGGAAGAAAAGGTTTTGAAGTTTATGTAA

Predicted protein sequences of Glyma13g29580

Limit To All Plant Sequences

>Glyma13g29580.1   sequence type=predicted peptide   gene model=Glyma13g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPGNVKAIGIDLGTTYSCVAVWQHNHVEVIPNDQGNRTTPSYVAFTDTQRLLGDAAINQRSMNPQNTVFDAKRLIGRRFSDQSVQQDMKLWPFKVVPGNRDKPMISRQATKDAGKIAGLNVLRIINEPTAAAIAYGLNKKGWREGMFKVKATVGDTHLGGVDFDNKMVDYLVSIFKRRYKKDIGENPKALGRLRSACEKAKRILSSSSQTTIELDSLCGGVDLHANFSRALFEELNKDLFMKCMETVEKCLKEARIAKSQVHEFVLVGGSTRIPKVQQLLKDMFSVNGNKELCKSINPDEAVAYGAAVQAAILSGEGDKKVEDLLLLDVMPLSLGIETDGGEMSVLIPKNTMIPTKRESVFSTFSDNQTSVLIKVFEGERAKTEDNFLLGKFELSGFTPSPRGVPQINVGFDVDVDGIVEVTARDRSTGLKKKITISNKHGRLSPEEMRRMVRDAVRYKAEDEEVRNKVRIKNLLENYAFEMRDRVKNLEKVVEETIEWLDRNQLAETDEFEYKRQELEEKVLKFM*

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