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Report for Sequence Feature Glyma13g29550

Feature Type:gene_model
Chromosome:Gm13
Start:32451232
stop:32452886
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g29550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45690AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1264) | chr5:18535139-18536259 REVERSE LENGTH=247 SoyBaseE_val: 2.00E-103ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06884PFAM Protein of unknown function (DUF1264) JGI ISS
UniRef100_B6UI56UniRef Annotation by Michelle Graham. Most informative UniRef hit: Secreted protein n=1 Tax=Zea mays RepID=B6UI56_MAIZE SoyBaseE_val: 2.00E-102ISS
UniRef100_C6SWV3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWV3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g29550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29550
ParalogEvidenceComments
Glyma15g09460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g223700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g29550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g29550
>Glyma13g29550.1   sequence type=CDS   gene model=Glyma13g29550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACCGACAAGTCACCGGACCCAACGCCGGCGAAGGGTCCGGATCCAACTCCGGGGAAGCCGATGAGTGTTGGTCAGCACGTGATCGACAAGAGTGCAATGATGGTGCAGTCGCTGGACCCCATTAAGCAGATGAGTCAGCACGTGTGCTCCTTCGCTATCTACAGCCATGACATGTCTCGCCAGATAGAGACACATCACTACTGCTCCAGACTCCACCAGAACTTCATACAATGTGCTGTCTATGATTCCGATGAATCCAAAGCTCGTCTCCTCGGGGTGGAGTACATCGTTCCTGCTGATGTCTTTGAAGCCTTTCCTCCGGAGGAGCAGAAACTTTGGCATTCTCATGCTTATGAGATTAAATCAGGCCTGTTGGTGAATCCTAGAGTTCCTGAGGTTGTTGCCATGCCAGAGCTCGAAAACCTTGCCCAAACTTACGGCAAATTCTGGTGTACATGGCAGGTTGACAGAGGGGATAGGCTTCCTATGGGTGCACCTGCCCTGATGATGTCTCCACAAGCAGCGAGTCCTGGTTTGGTGAGGGCAGAACTGGTGCTTGAGAGGGATGCCAAGTACAATTTTTCCTCAAAGAGCCTGAAAAGCTCAAGATTGGAGATTCCTGAGCCAGAGATGATCAACCCCTTGGCTGATTATTGGAAGCAACATGGCAAAGGATTTGTCATTGACATCGAGGAGACTGAGATGAAGTTGAGGCCACCTTTTCCTTGA
Predicted protein sequences of Glyma13g29550
>Glyma13g29550.1   sequence type=predicted peptide   gene model=Glyma13g29550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTDKSPDPTPAKGPDPTPGKPMSVGQHVIDKSAMMVQSLDPIKQMSQHVCSFAIYSHDMSRQIETHHYCSRLHQNFIQCAVYDSDESKARLLGVEYIVPADVFEAFPPEEQKLWHSHAYEIKSGLLVNPRVPEVVAMPELENLAQTYGKFWCTWQVDRGDRLPMGAPALMMSPQAASPGLVRAELVLERDAKYNFSSKSLKSSRLEIPEPEMINPLADYWKQHGKGFVIDIEETEMKLRPPFP*






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