SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29670 | AT | Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363 | SoyBase | E_val: 5.00E-160 | ISS |
| GO:0000038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0042335 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cuticle development | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PTHR22835 | Panther | ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR22835:SF39 | Panther | LATERAL SIGNALING TARGET PROTEIN 2 | JGI | ISS | |
| PF00657 | PFAM | GDSL-like Lipase/Acylhydrolase | JGI | ISS | |
| UniRef100_B9S8H3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S8H3_RICCO | SoyBase | E_val: 1.00E-162 | ISS |
| UniRef100_I1M1M0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1M0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g29490 not represented in the dataset |
Glyma13g29490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g09560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g223000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g29490.2 sequence type=transcript gene model=Glyma13g29490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAAAATATCCCTCATTTCAGAAGTTCCTTCTACTACTATATATAGCTTTGCTATTTTCAAAAGTTCCTCATCCTCTCGTGCACTTAACTCTTACATATATATATACACACACACAATAGTTAATTTGTTGTTGCTTCAATTCGTTTCTTGCGTCAAATTAAGTCATCTGGGGAGGCTCATAATGAATATAGGGTTAGTGGTAATAGTGGCTGTGGTATTGTGGAGTGGGGTTGCAGCTGCACAAGCACAACGAGTACCTTGCTACTTTATTTTTGGAGACTCTTCGGCAGATAATGGGAACAACAACCAGCTTTGGTCAAATGCAAGAGCTAATTACCTTCCTTATGGGATTGACTCCTCTGTTGGCCCAACTGGAAGGTTTTCCAATGGGAAAACTACTGTTGATGTAATCGCTGAGCTTTTGGGGTTGGCCGGTTTCATACGTCCCTATGCAAGTGCTGGAGCCCGAGACATATTTTACGGAGTCAATTATGCTTCAGCAGCTTCCGGAATTAGAGACGAAACTGGACAACAATTGGGAAGCCGTATCAGTCTTAGAGGGCAGGTGCAAAACCACATAAGGACGGCGTACCAGATGTTAAATTCACTGGGAGATGTGAACAGAACTTTAACTTACCTGGGCAGGTGCATTTATTCAATTGGAGTGGGTGGCGATGATTATCTTAACAACTATTTCATGCCTCAATTCTATCCCACCAGCAGGCAGTACACACCAGAGCAGTATGCTAATCTTCTTCTCCAATCATATGCTCAACTACTCGAGGTTCTGTACAACTATGGGGCAAGGAAAATGGTATTATTTGGGATTAGTCCGATAGGTTGCACCCCTTATGCATTGGCTCAAAGCAGCCCAGATGGTAGAACATGTGTGGAAAGACTGAATTCTGCAACCCAATTATTCAACACCGGATTGAGATCTCTTGTTGATCAACTCAACAACCGGATTCCGAATGCAAGATTCATCTATGTAAACGTTTATGGTATCATGCAAAATATCATAAGCAACCCATCGTCCTTTGGTAATAATTTTTTGCCTAAAATATTTGCTATTTGATCGATCGAGAGTCAAATTTTGGACACAGTTGGTGCTTATTTTGTTCCCATGCATGTGGTCTCAAATTTTTAGGTGTCAGAGTCACAAATGTTGGGTGCTGTAGGGTAGCAAGCAACAACGGTCAAAGTACATGTGTGCCCCTGCAAACCCCATGCTTGAACAGGAACGAGTACCTGTATTGGGATGCATCTAATCCAACAGAGACCGCCAATACTATCATTGCTAGGAGAGCTTACAATGCTCAATCTACATCGGATGCTTTCCCTATTGATATTAATCGCTTAGCTCAGATCTAAATAGGGTCTAGTAGTGGCAATAAGCTCTAGTAGTTGCAATAAGCGGTGCCATAATAACAGTGACTGACTGTAATGTGTAATTTTTGGAGAAGAAAATGATATTTTTTAATTGAGTTTAATGTTGATGCACTATATTGTTACTTAATCA
>Glyma13g29490.1 sequence type=CDS gene model=Glyma13g29490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATAGGGTTAGTGGTAATAGTGGCTGTGGTATTGTGGAGTGGGGTTGCAGCTGCACAAGCACAACGAGTACCTTGCTACTTTATTTTTGGAGACTCTTCGGCAGATAATGGGAACAACAACCAGCTTTGGTCAAATGCAAGAGCTAATTACCTTCCTTATGGGATTGACTCCTCTGTTGGCCCAACTGGAAGGTTTTCCAATGGGAAAACTACTGTTGATGTAATCGCTGAGCTTTTGGGGTTGGCCGGTTTCATACGTCCCTATGCAAGTGCTGGAGCCCGAGACATATTTTACGGAGTCAATTATGCTTCAGCAGCTTCCGGAATTAGAGACGAAACTGGACAACAATTGGGAAGCCGTATCAGTCTTAGAGGGCAGGTGCAAAACCACATAAGGACGGCGTACCAGATGTTAAATTCACTGGGAGATGTGAACAGAACTTTAACTTACCTGGGCAGGTGCATTTATTCAATTGGAGTGGGTGGCGATGATTATCTTAACAACTATTTCATGCCTCAATTCTATCCCACCAGCAGGCAGTACACACCAGAGCAGTATGCTAATCTTCTTCTCCAATCATATGCTCAACTACTCGAGGTTCTGTACAACTATGGGGCAAGGAAAATGGTATTATTTGGGATTAGTCCGATAGGTTGCACCCCTTATGCATTGGCTCAAAGCAGCCCAGATGGTAGAACATGTGTGGAAAGACTGAATTCTGCAACCCAATTATTCAACACCGGATTGAGATCTCTTGTTGATCAACTCAACAACCGGATTCCGAATGCAAGATTCATCTATGTAAACGTTTATGGTATCATGCAAAATATCATAAGCAACCCATCGTCCTTTGGTGTCAGAGTCACAAATGTTGGGTGCTGTAGGGTAGCAAGCAACAACGGTCAAAGTACATGTGTGCCCCTGCAAACCCCATGCTTGAACAGGAACGAGTACCTGTATTGGGATGCATCTAATCCAACAGAGACCGCCAATACTATCATTGCTAGGAGAGCTTACAATGCTCAATCTACATCGGATGCTTTCCCTATTGATATTAATCGCTTAGCTCAGATCTAA >Glyma13g29490.2 sequence type=CDS gene model=Glyma13g29490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATAGGGTTAGTGGTAATAGTGGCTGTGGTATTGTGGAGTGGGGTTGCAGCTGCACAAGCACAACGAGTACCTTGCTACTTTATTTTTGGAGACTCTTCGGCAGATAATGGGAACAACAACCAGCTTTGGTCAAATGCAAGAGCTAATTACCTTCCTTATGGGATTGACTCCTCTGTTGGCCCAACTGGAAGGTTTTCCAATGGGAAAACTACTGTTGATGTAATCGCTGAGCTTTTGGGGTTGGCCGGTTTCATACGTCCCTATGCAAGTGCTGGAGCCCGAGACATATTTTACGGAGTCAATTATGCTTCAGCAGCTTCCGGAATTAGAGACGAAACTGGACAACAATTGGGAAGCCGTATCAGTCTTAGAGGGCAGGTGCAAAACCACATAAGGACGGCGTACCAGATGTTAAATTCACTGGGAGATGTGAACAGAACTTTAACTTACCTGGGCAGGTGCATTTATTCAATTGGAGTGGGTGGCGATGATTATCTTAACAACTATTTCATGCCTCAATTCTATCCCACCAGCAGGCAGTACACACCAGAGCAGTATGCTAATCTTCTTCTCCAATCATATGCTCAACTACTCGAGGTTCTGTACAACTATGGGGCAAGGAAAATGGTATTATTTGGGATTAGTCCGATAGGTTGCACCCCTTATGCATTGGCTCAAAGCAGCCCAGATGGTAGAACATGTGTGGAAAGACTGAATTCTGCAACCCAATTATTCAACACCGGATTGAGATCTCTTGTTGATCAACTCAACAACCGGATTCCGAATGCAAGATTCATCTATGTAAACGTTTATGGTATCATGCAAAATATCATAAGCAACCCATCGTCCTTTGGTAATAATTTTTTGCCTAAAATATTTGCTATTTGA
>Glyma13g29490.1 sequence type=predicted peptide gene model=Glyma13g29490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNIGLVVIVAVVLWSGVAAAQAQRVPCYFIFGDSSADNGNNNQLWSNARANYLPYGIDSSVGPTGRFSNGKTTVDVIAELLGLAGFIRPYASAGARDIFYGVNYASAASGIRDETGQQLGSRISLRGQVQNHIRTAYQMLNSLGDVNRTLTYLGRCIYSIGVGGDDYLNNYFMPQFYPTSRQYTPEQYANLLLQSYAQLLEVLYNYGARKMVLFGISPIGCTPYALAQSSPDGRTCVERLNSATQLFNTGLRSLVDQLNNRIPNARFIYVNVYGIMQNIISNPSSFGVRVTNVGCCRVASNNGQSTCVPLQTPCLNRNEYLYWDASNPTETANTIIARRAYNAQSTSDAFPIDINRLAQI* >Glyma13g29490.2 sequence type=predicted peptide gene model=Glyma13g29490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNIGLVVIVAVVLWSGVAAAQAQRVPCYFIFGDSSADNGNNNQLWSNARANYLPYGIDSSVGPTGRFSNGKTTVDVIAELLGLAGFIRPYASAGARDIFYGVNYASAASGIRDETGQQLGSRISLRGQVQNHIRTAYQMLNSLGDVNRTLTYLGRCIYSIGVGGDDYLNNYFMPQFYPTSRQYTPEQYANLLLQSYAQLLEVLYNYGARKMVLFGISPIGCTPYALAQSSPDGRTCVERLNSATQLFNTGLRSLVDQLNNRIPNARFIYVNVYGIMQNIISNPSSFGNNFLPKIFAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
