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Report for Sequence Feature Glyma13g29480

Feature Type:gene_model
Chromosome:Gm13
Start:32366246
stop:32368669
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g29480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45660AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:18525103-18526726 FORWARD LENGTH=226 SoyBaseE_val: 2.00E-49ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1M1L9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1L9_SOYBN SoyBaseE_val: 2.00E-147ISS

Expression Patterns of Glyma13g29480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g29480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g222900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g29480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g29480
>Glyma13g29480.1   sequence type=CDS   gene model=Glyma13g29480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCGTTCGATCAAACTCGATTACCGTCTTCTTCGTGGCATTCATTATCCTCACAACAGCACCATCTCCTTCCCAATCCCTCTCTTTCTCCTCTTTCTTCCGTTACCGAAACCTCTTCTCCCTCTCGCACTCCCTCCTCATCGGCGTCGCCAACCTCCGCGCCGCACGCGGCGACGTCGCCGGCGCCGATCGAGCCAGGTCCATCGCCGACGGCCTCGATCAGGGAACCGTCTTCGGCTTCTTGAAGCTCCTCTGGACATTGTCGTGGACGGATATGTCCTTCACGGACCTCTACGGCGCTGTTTCCGACATGAACGAGCTGCTGCGGGGCTTGACTGAGTTGACTCGCTTGGAATCGGTCGCGGAAAGGTCCGCTTGGGTTTCCCGAAATTACCAAAGTGTCCTCACCGTCTTTAAGTCCCTCTCCAGAAAGCTCCTCAAAGCGCTTGGCCAGTCGGGAGTGATGAGGGAAATAGGGGAGACGTTTCAGAAAGAGGTGGTGGAAGGTGGATTAATCAGGGATTGCCTTGAATTGGGTAACAATGATCTAAAGGCTTTGATTCAGATTGTCAAGGATTTGTTGTTGCAATTCTTTCCTGTTCGTGATAAAGACCATGATCTATAG
Predicted protein sequences of Glyma13g29480
>Glyma13g29480.1   sequence type=predicted peptide   gene model=Glyma13g29480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVRSNSITVFFVAFIILTTAPSPSQSLSFSSFFRYRNLFSLSHSLLIGVANLRAARGDVAGADRARSIADGLDQGTVFGFLKLLWTLSWTDMSFTDLYGAVSDMNELLRGLTELTRLESVAERSAWVSRNYQSVLTVFKSLSRKLLKALGQSGVMREIGETFQKEVVEGGLIRDCLELGNNDLKALIQIVKDLLLQFFPVRDKDHDL*






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