Glyma13g29370 - SoyBase

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Report for Sequence Feature Glyma13g29370

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32276531
stop:	32280790
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22920	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 12 \| chr2:9753938-9757420 FORWARD LENGTH=435	SoyBase	E_val: 7.00E-176	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF7	Panther	SERINE CARBOXYPEPTIDASE I (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G7ILY2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7ILY2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B07E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B07E related cluster n=1 Tax=unknown RepID=UPI000233B07E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g29370 not represented in the dataset	Glyma13g29370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29370

Paralog	Evidence	Comments
Glyma15g09700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g221900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g29370

Limit To All Plant Sequences

>Glyma13g29370.4   sequence type=transcript   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTAAGATGTAATATTAGTTTAATTATTAATTAATTTATTAATAATAAAATAAACTGTGTCTATGTCAATTCTGATTATATCAAGGACTAAGAAACTCCAATTAAAAACCATGGATATGCTTAGAAATGGAAGAGGGCATTAAAAATGGAAAATTTTAGTTCAAGTTACATTTATTACTGGGTTCTACTACCCTTTTTTTTGTTATCACAATTCTCCTTTCAACTTGCATGGTGTGGCTCCATAGTAAAGTTCCTTCCTGGATTCAAGGGACCCCTTCCTTTTGTACTTGAAACCGGGTCAGTTACACTTAGCTAGTAACTAGGATGTGCAGGCATTCTACTACTTCATTGAGTCAGAGAACAATCCCAAGAAAGATCCTCTCATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCTTATCTGGACTTGTGTTTGAAATAGGACCACTTACATTCAAATATGAGGAATACAATGGGAGCCTGCCCAATTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCCACAACAGAGTTTGCTGCTCAACGAAGCGACTGGATTCTAGTTCACCAAGTCCATCAGTTTCTTAGGAAGTGGTTGATTGATCATCCAAATTTTTCGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACGAGGAAATGAAAAAGGGCTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATGCAGCAACAACTCGAAGGGAAAAAAACTATCAAATTCCCTTCGCTCATGGAATGGGACTTATTTCTGATGAACTATATGGGTCACTGCAAAAAAATTGTAAAGAAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCTAGAGATATCGAGTCATTCAATGAGGTTACATCAGGACTTAATTCAGCCCATATTTTGGACCCGTCATGTGAGTGGCTTGATACTGAAACATCTTGGAGGAGATCTCTACTTAAGAAATATCCCAGAAAGAATTTCCTTAATACTCACCTCAAATTGGCACCCTTAAACTGTCGGAGTTATGTATACTTCCTCTGCGGTTATTGGGCCAATGATGATAATGTTCGCACTGCACTGCACATCCGTAAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTCGATATACCTAACAAGAAGGATATCTCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTACCGTTCGCTGATATACAGTGGCGATCATGACATGACAATTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGAGTGGAGGCAATGGCATACAAATGGTCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGCCACACAGCTCCGGAGTACAAGCCTGATGAATGCTTTGCCATGTTCAGTAGGTGGATATCTAACAGTGCTTTGTAGGAATTTCCAATGAAGTCATCTTTTCTGTTGACAAGGACTAAACTTTGCATCCATTGCATAACAAAGTCACAGCCTCACGGTATATTTTATTCAGTAACAAATTTGTGTCATTATCAACTGAAAAAAAAATTAATATATTCTAAAGGTAGCAAGAGATAGATCCATATATTGAAAGAAAAACCAGTCTTATCAGGTACAGCTGAATAAAAAAAAGTTGTTTAAAATATAATACAATGTAAAAGTTTAGATCGTGCACCTAGATAAGCATTAAAATTTTCTTTCAATTGCATGAATGTGATACGCATATCTTTGCGGAGACCAACTTTGGTTATCGATCCTTTTATAAGTATAGAACCAGACTAAAAACAAAGCATCTCTAT

>Glyma13g29370.5   sequence type=transcript   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTAAGATGTAATATTAGTTTAATTATTAATTAATTTATTAATAATAAAATAAACTGTGTCTATGTCAATTCTGATTATATCAAGGACTAAGAAACTCCAATTAAAAACCATGGATATGCTTAGAAATGGAAGAGGGCATTAAAAATGGAAAATTTTAGTTCAAGTTACATTTATTACTGGGTTCTACTACCCTTTTTTTTGTTATCACAATTCTCCTTTCAACTTGCATGGTGTGGCTCCATAGTAAAGTTCCTTCCTGGATTCAAGGGACCCCTTCCTTTTGTACTTGAAACCGGGTCAGTTACACTTAGCTAGTAACTGTAAGGCTATAGTTTATGGGATTAAAATCATTAATTTGCTTGAATATCATAGACATGTTATGTTACATAACATTTGTTGGATAGGTATGTGGGAGTGGGTGAATCAGAGGATGTGCAGGCATTCTACTACTTCATTGAGTCAGAGAACAATCCCAAGAAAGATCCTCTCATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCTTATCTGGACTTGTGTTTGAAATAGGACCACTTACATTCAAATATGAGGAATACAATGGGAGCCTGCCCAATTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCCACAACAGAGTTTGCTGCTCAACGAAGCGACTGGATTCTAGTTCACCAAGTCCATCAGTTTCTTAGGAAGTGGTTGATTGATCATCCAAATTTTTCGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACGAGGAAATGAAAAAGGGCTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATGCAGCAACAACTCGAAGGGAAAAAAACTATCAAATTCCCTTCGCTCATGGAATGGGACTTATTTCTGATGAACTATATGGGTCACTGCAAAAAAATTGTAAAGAAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCTAGAGATATCGAGTCATTCAATGAGGTTACATCAGGACTTAATTCAGCCCATATTTTGGACCCGTCATGTGAGTGGCTTGATACTGAAACATCTTGGAGGAGATCTCTACTTAAGAAATATCCCAGAAAGAATTTCCTTAATACTCACCTCAAATTGGCACCCTTAAACTGTCGGAGTTATGTATACTTCCTCTGCGGTTATTGGGCCAATGATGATAATGTTCGCACTGCACTGCACATCCGTAAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTCGATATACCTAACAAGAAGGATATCTCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTACCGTTCGCTGATATACAGTGGCGATCATGACATGACAATTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGAGTGGAGGCAATGGCATACAAATGGTCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGCCACACAGCTCCGGAGTACAAGCCTGATGAATGCTTTGCCATGTTCAGTAGGTGGATATCTAACAGTGCTTTGTAGGAATTTCCAATGAAGTCATCTTTTCTGTTGACAAGGACTAAACTTTGCATCCATTGCATAACAAAGTCACAGCCTCACGGTATATTTTATTCAGTAACAAATTTGTGTCATTATCAACTGAAAAAAAAATTAATATATTCTAAAGGTAGCAAGAGATAGATCCATATATTGAAAGAAAAACCAGTCTTATCAGGTACAGCTGAATAAAAAAAAGTTGTTTAAAATATAATACAATGTAAAAGTTTAGATCGTGCACCTAGATAAGCATTAAAATTTTCTTTCAATTGCATGAATGTGATACGCATATCTTTGCGGAGACCAACTTTGGTTATCGATCCTTTTATAAGTATAGAACCAGACTAAAAACAAAGCATCTCTAT

Coding sequences of Glyma13g29370

Limit To All Plant Sequences

>Glyma13g29370.1   sequence type=CDS   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATTTTAGTTCAAGTTACATTTATTACTGGGTTCTACTACCCTTTTTTTTGTTATCACAATTCTCCTTTCAACTTGCATGGTGTGGCTCCATAGTAAAGTTCCTTCCTGGATTCAAGGGACCCCTTCCTTTTGTACTTGAAACCGGGTATGTGGGAGTGGGTGAATCAGAGGATGTGCAGGCATTCTACTACTTCATTGAGTCAGAGAACAATCCCAAGAAAGATCCTCTCATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCTTATCTGGACTTGTGTTTGAAATAGGACCACTTACATTCAAATATGAGGAATACAATGGGAGCCTGCCCAATTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCCACAACAGAGTTTGCTGCTCAACGAAGCGACTGGATTCTAGTTCACCAAGTCCATCAGTTTCTTAGGAAGTGGTTGATTGATCATCCAAATTTTTCGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACGAGGAAATGAAAAAGGGCTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATGCAGCAACAACTCGAAGGGAAAAAAACTATCAAATTCCCTTCGCTCATGGAATGGGACTTATTTCTGATGAACTATATGGGTCACTGCAAAAAAATTGTAAAGAAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCTAGAGATATCGAGTCATTCAATGAGGTTACATCAGGACTTAATTCAGCCCATATTTTGGACCCGTCATGTGAGTGGCTTGATACTGAAACATCTTGGAGGAGATCTCTACTTAAGAAATATCCCAGAAAGAATTTCCTTAATACTCACCTCAAATTGGCACCCTTAAACTGTCGGAGTTATGTATACTTCCTCTGCGGTTATTGGGCCAATGATGATAATGTTCGCACTGCACTGCACATCCGTAAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTCGATATACCTAACAAGAAGGATATCTCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTACCGTTCGCTGATATACAGTGGCGATCATGACATGACAATTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGAGTGGAGGCAATGGCATACAAATGGTCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGCCACACAGCTCCGGAGTACAAGCCTGATGAATGCTTTGCCATGTTCAGTAGGTGGATATCTAACAGTGCTTTGTAG

>Glyma13g29370.4   sequence type=CDS   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCTTATCTGGACTTGTGTTTGAAATAGGACCACTTACATTCAAATATGAGGAATACAATGGGAGCCTGCCCAATTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCCACAACAGAGTTTGCTGCTCAACGAAGCGACTGGATTCTAGTTCACCAAGTCCATCAGTTTCTTAGGAAGTGGTTGATTGATCATCCAAATTTTTCGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACGAGGAAATGAAAAAGGGCTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATGCAGCAACAACTCGAAGGGAAAAAAACTATCAAATTCCCTTCGCTCATGGAATGGGACTTATTTCTGATGAACTATATGGGTCACTGCAAAAAAATTGTAAAGAAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCTAGAGATATCGAGTCATTCAATGAGGTTACATCAGGACTTAATTCAGCCCATATTTTGGACCCGTCATGTGAGTGGCTTGATACTGAAACATCTTGGAGGAGATCTCTACTTAAGAAATATCCCAGAAAGAATTTCCTTAATACTCACCTCAAATTGGCACCCTTAAACTGTCGGAGTTATGTATACTTCCTCTGCGGTTATTGGGCCAATGATGATAATGTTCGCACTGCACTGCACATCCGTAAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTCGATATACCTAACAAGAAGGATATCTCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTACCGTTCGCTGATATACAGTGGCGATCATGACATGACAATTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGAGTGGAGGCAATGGCATACAAATGGTCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGCCACACAGCTCCGGAGTACAAGCCTGATGAATGCTTTGCCATGTTCAGTAGGTGGATATCTAACAGTGCTTTGTAG

>Glyma13g29370.5   sequence type=CDS   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCTTATCTGGACTTGTGTTTGAAATAGGACCACTTACATTCAAATATGAGGAATACAATGGGAGCCTGCCCAATTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCCACAACAGAGTTTGCTGCTCAACGAAGCGACTGGATTCTAGTTCACCAAGTCCATCAGTTTCTTAGGAAGTGGTTGATTGATCATCCAAATTTTTCGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACGAGGAAATGAAAAAGGGCTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATGCAGCAACAACTCGAAGGGAAAAAAACTATCAAATTCCCTTCGCTCATGGAATGGGACTTATTTCTGATGAACTATATGGGTCACTGCAAAAAAATTGTAAAGAAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCTAGAGATATCGAGTCATTCAATGAGGTTACATCAGGACTTAATTCAGCCCATATTTTGGACCCGTCATGTGAGTGGCTTGATACTGAAACATCTTGGAGGAGATCTCTACTTAAGAAATATCCCAGAAAGAATTTCCTTAATACTCACCTCAAATTGGCACCCTTAAACTGTCGGAGTTATGTATACTTCCTCTGCGGTTATTGGGCCAATGATGATAATGTTCGCACTGCACTGCACATCCGTAAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTCGATATACCTAACAAGAAGGATATCTCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTACCGTTCGCTGATATACAGTGGCGATCATGACATGACAATTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGAGTGGAGGCAATGGCATACAAATGGTCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGCCACACAGCTCCGGAGTACAAGCCTGATGAATGCTTTGCCATGTTCAGTAGGTGGATATCTAACAGTGCTTTGTAG

Predicted protein sequences of Glyma13g29370

Limit To All Plant Sequences

>Glyma13g29370.1   sequence type=predicted peptide   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENFSSSYIYYWVLLPFFLLSQFSFQLAWCGSIVKFLPGFKGPLPFVLETGYVGVGESEDVQAFYYFIESENNPKKDPLMLWLTGGPGCSALSGLVFEIGPLTFKYEEYNGSLPNLVLRPHSWTKVSSIIFVDLPVSTGFTYATTEFAAQRSDWILVHQVHQFLRKWLIDHPNFSSNEVYIGGDSYSGIPIPVIVQEISRGNEKGLQPWINLQGYLLGNAATTRREKNYQIPFAHGMGLISDELYGSLQKNCKEEYINVDTRNVLCSRDIESFNEVTSGLNSAHILDPSCEWLDTETSWRRSLLKKYPRKNFLNTHLKLAPLNCRSYVYFLCGYWANDDNVRTALHIRKGSIGKWHRCTFDIPNKKDISSSYEYHVNLSRKGYRSLIYSGDHDMTIPFLATQAWIRSLNYSIVDEWRQWHTNGQVAGYTRTYSNRMTFATVKGGGHTAPEYKPDECFAMFSRWISNSAL*

>Glyma13g29370.4   sequence type=predicted peptide   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLWLTGGPGCSALSGLVFEIGPLTFKYEEYNGSLPNLVLRPHSWTKVSSIIFVDLPVSTGFTYATTEFAAQRSDWILVHQVHQFLRKWLIDHPNFSSNEVYIGGDSYSGIPIPVIVQEISRGNEKGLQPWINLQGYLLGNAATTRREKNYQIPFAHGMGLISDELYGSLQKNCKEEYINVDTRNVLCSRDIESFNEVTSGLNSAHILDPSCEWLDTETSWRRSLLKKYPRKNFLNTHLKLAPLNCRSYVYFLCGYWANDDNVRTALHIRKGSIGKWHRCTFDIPNKKDISSSYEYHVNLSRKGYRSLIYSGDHDMTIPFLATQAWIRSLNYSIVDEWRQWHTNGQVAGYTRTYSNRMTFATVKGGGHTAPEYKPDECFAMFSRWISNSAL*

>Glyma13g29370.5   sequence type=predicted peptide   gene model=Glyma13g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLWLTGGPGCSALSGLVFEIGPLTFKYEEYNGSLPNLVLRPHSWTKVSSIIFVDLPVSTGFTYATTEFAAQRSDWILVHQVHQFLRKWLIDHPNFSSNEVYIGGDSYSGIPIPVIVQEISRGNEKGLQPWINLQGYLLGNAATTRREKNYQIPFAHGMGLISDELYGSLQKNCKEEYINVDTRNVLCSRDIESFNEVTSGLNSAHILDPSCEWLDTETSWRRSLLKKYPRKNFLNTHLKLAPLNCRSYVYFLCGYWANDDNVRTALHIRKGSIGKWHRCTFDIPNKKDISSSYEYHVNLSRKGYRSLIYSGDHDMTIPFLATQAWIRSLNYSIVDEWRQWHTNGQVAGYTRTYSNRMTFATVKGGGHTAPEYKPDECFAMFSRWISNSAL*

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