SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73240 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27542397-27544668 REVERSE LENGTH=519 | SoyBase | E_val: 3.00E-157 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13269 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR13269:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_I1M1I7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1I7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01CP4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial oxoglutarate/malate carrier proteins (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01CP4_OSTTA | SoyBase | E_val: 4.00E-06 | ISS |
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Glyma13g29250 not represented in the dataset |
Glyma13g29250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g09840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g220600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g29250.1 sequence type=CDS gene model=Glyma13g29250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTCTGGGAGCACAAGAAGGGTGGAGTTGGTGCTCAAGAACAGGTTCCTCAGTTACTTGATCTGGCAATCCATACATTCCTCTCTCATTTTCATTTCCCTTCTCTCCTTCTTCACTTCACCTCACTACCCCTTTCTCTCCTTTCTCCTCTTCCTCCCTTCCCACCTCCTCTTCTCCGCCACCCTCTCCTTTATCGCCTCCCCCCACCCCCGCCCCCGCTTCACCCTCTCTCTCCTTTTCGCCACCGTTTCCGCCTTCTCCGCCGCTCTCTCCCTCTCTGCCGCCGCTCCCGCCGCCCACACTCTCCCCGGCGTCTCCCGGTTAGGGTTTAGGGGTTTCCTCGTCGGTTCCCTCTTCGGCGCGCATTACGTCTTCAAGCGCCGATGGGTTCTTCACTTCCCCATTATTCAGCGTCCTCCTTTTTTCAGCTTCAAGATGGGAGTTCCTTCAGCTGCCAGACGAGCTTTGAAGCTTTCCGTTGTTGCTTCCATTTTCTCGGGTATTTTGTTGGAGCTTCTGCCGCATCCGTTTAATTACAGCGTCGCCGCCACGGGAAGATTCTTCACCGAGCAGATTACCTCTTTTGCTGCCACTTTTGCTATCTTTTTTTCTTGGGAATTGACTCATCATTTGCATTGGGTTTTGCATACTAAGAGGTTCATATTTGCACCTCCAAAAGGATCAGCAGTGGCAGAAACAAATCCAAGTGAGCATCTCCTTTCAGCTTTGGAGGAGAGTAATCCTACATCTCTTCTTCTGTATCTTGCATATCTCGATCTCTTTATGGTTTGTGAGAACAATGTTGACACTTGGAGGCGTGCGGGATTTTTTGAAGAAACCAGTGAGACTTACAAAAGAGTAATTGCGGTGTGCTTGAAGCCGTTGGAGCATCTTGCAACAAAATTAGGTGAAGGCTTAGGAAATCCTGTTGACAAAGCCACTCAACTATCAAATCAGCTGTTGTCCCCAACTGATGCACGGCCAGATTTGAAGCACATAGAAGAACTACACAACTTTCAGCTATATGCGTGGTGTTCAAGGACTGCTGCCTCACTGACTGCCTGCTCACGTAAAGACGACAAGTTTGGGGTTGCTCAGCTTTCTGGGAGTAATGCTGCCGTGGTTTCAACACTGCTATCCTGCCTTCTTGCTGTTGAAAATTTCATGGGAAAGAAAACAAACCTGCAATCCCCAAATCAATTGTTGGGACCTGCTGGTATCAAATGGGCAACTGTGAATAGTGGAAGAGTTGATGTTGCTGCTGGTAAAAGAAGTGGTCCAGTAAATTCAAAAGCTTATGCTATTGCTGATGTTCTCAAGATTTCAATCTACCAAATAGTCTCTGCATTCCATGATGAGATGTTGGCTGGTGCTAAAGCAAGTCTTCTGGAGAAGGACTGGGTCACAAATGGGAAGCCACTTTTTGGTACTCGTGAGATGCTCATACAAAAATTACGTCTTTTCCTTGATTTTCGAGCTACCTAA
>Glyma13g29250.1 sequence type=predicted peptide gene model=Glyma13g29250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSGSTRRVELVLKNRFLSYLIWQSIHSSLIFISLLSFFTSPHYPFLSFLLFLPSHLLFSATLSFIASPHPRPRFTLSLLFATVSAFSAALSLSAAAPAAHTLPGVSRLGFRGFLVGSLFGAHYVFKRRWVLHFPIIQRPPFFSFKMGVPSAARRALKLSVVASIFSGILLELLPHPFNYSVAATGRFFTEQITSFAATFAIFFSWELTHHLHWVLHTKRFIFAPPKGSAVAETNPSEHLLSALEESNPTSLLLYLAYLDLFMVCENNVDTWRRAGFFEETSETYKRVIAVCLKPLEHLATKLGEGLGNPVDKATQLSNQLLSPTDARPDLKHIEELHNFQLYAWCSRTAASLTACSRKDDKFGVAQLSGSNAAVVSTLLSCLLAVENFMGKKTNLQSPNQLLGPAGIKWATVNSGRVDVAAGKRSGPVNSKAYAIADVLKISIYQIVSAFHDEMLAGAKASLLEKDWVTNGKPLFGTREMLIQKLRLFLDFRAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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