SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62100 | AT | Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 2 | chr5:24940477-24941775 FORWARD LENGTH=285 | SoyBase | E_val: 1.00E-61 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| PTHR12329 | Panther | BCL2-ASSOCIATED ATHANOGENE | JGI | ISS | |
| PTHR12329:SF8 | Panther | OS09G0524800 PROTEIN | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| PF02179 | PFAM | BAG domain | JGI | ISS | |
| UniRef100_I1M1I6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1I6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q7XTT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0058K23.16 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XTT7_ORYSJ | SoyBase | E_val: 3.00E-92 | ISS |
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Glyma13g29240 not represented in the dataset |
Glyma13g29240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g09850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g220500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g29240.1 sequence type=CDS gene model=Glyma13g29240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAAGAAGAAACCGAGCGCGAGAGAGAATTCGTCGTCGTCGTCGTCCACGGCGGCCAGAGAAGAAGAGAGCGAATGGGAAATGAGGCCCGGAGGAATGCTGGTGCAGAAAAGGACCGCGAATACGGATGCTGCTGTAACACGGAATTTGCGCCTCCGAATCGCCTACGGTGCTCTCCGTTACGAGATCTGCGTCAGTTCCATCGCCACTTTCGGGGAAGTGAAGAAGGTGCTTTGTGGGGAAACGGGGTTAGAGGTGGATGAACAGAAACTGGTGTACAGAGGCAGAGAGCGAGAAAATGGAGAGTACTTGGACGTGTGCGGAGTGAAGGACAGATCAAAAGTGGTGTTAATCCAAGACCCTTCAAGCATTGAGCGACGCTTCATCCAGATGCGTATCAACTCTAAGATCCAAACAGCACATCGCGCAATCAACAATGTCGCTGTCCAACTTGATCAGCTCGCGGACCAGGTCTCTGCCATTGAAAAGTCTATTTCCAACGGAGTCAAAGTACCAGAAGTTCAAATCACAACACTAATTGAGATGCTTATGAGACAAGCAATCAAATTAGAAAGCATTTCTGCAGAAGGCGGTGCCTCTGCACAGAAAAATTTGCAGGGAAAGAGAGTGCAAAAATGTGTTGAAAAACTGGATCAACTTAAGGTATCTAATGCAAGAATAAAACCTGTTGTTGTTACAACCAAGTGGGAGATCTTTGATCATCCTCCATCCTCAACCACGTGGGAATTATTCGATTGA
>Glyma13g29240.1 sequence type=predicted peptide gene model=Glyma13g29240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMKKKPSARENSSSSSSTAAREEESEWEMRPGGMLVQKRTANTDAAVTRNLRLRIAYGALRYEICVSSIATFGEVKKVLCGETGLEVDEQKLVYRGRERENGEYLDVCGVKDRSKVVLIQDPSSIERRFIQMRINSKIQTAHRAINNVAVQLDQLADQVSAIEKSISNGVKVPEVQITTLIEMLMRQAIKLESISAEGGASAQKNLQGKRVQKCVEKLDQLKVSNARIKPVVVTTKWEIFDHPPSSTTWELFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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