Glyma13g29225 - SoyBase

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Report for Sequence Feature Glyma13g29225

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32160176
stop:	32169158
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29225

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21065	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:11246375-11247763 FORWARD LENGTH=462	SoyBase	E_val: 0	ISS
KOG4362	KOG	Transcriptional regulator BRCA1	JGI		ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF78	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7MFF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MFF6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1M1I4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1I4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29225

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g29225 not represented in the dataset	Glyma13g29225 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29225

Paralog	Evidence	Comments
Glyma15g09865	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29225 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g220400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29225

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29225

Limit To All Plant Sequences

>Glyma13g29225.1   sequence type=CDS   gene model=Glyma13g29225   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGGGCTATTTCAAAGTCTTTGAATGTTAGAGAGGGGGAGGCAATACATTCGGTTACGATAAGAAATGGGTTTGAGTCGTTGGTGTTTGTTCAGAACAGTTTGCTTCATATATATGCTGCTTGTGGCGACACGGAAAGTGCATACAAGGTGTTTGAGTTAATGAAGGAGAGAGATCTCGTGGCTTGGAATTCTATGATTAATGGGTTTGCTCTTAATGGAAGGCCCAATGAAGCTTTGACTCTCTTTAGGGAGATGAGTGTGGAGGGTGTGGAGCCGGATGGGTTCACTGTGGTTAGCTTGCTATCTGCTAGTGCTGAGCTTGGAGCTCTAGAGTTAGGACGTAGGGTCCACGTGTACTTGTTGAAGGTCGGGTTGAGCAAGAACTCACATGTTACTAATTCATTGTTGGATCTTTATGCAAAGTGTGGGGCCATCAGGGAGGCTCAACGAGTGTTCAGTGAGATGAGTGAAAGGAATGCGGTGTCTTGGACATCGTTGATTGTTGGCTTGGCTGTTAATGGGTTTGGTGAGGAAGCACTTGAGCTTTTCAAAGAGATGGAGGGACAAGGACTGGTGCCTAGTGAGATCACTTTTGTTGGTGTCTTGTATGCGTGCAGCCATTGTGGGATGTTGGACGAAGGGTTTGAGTACTTTAGAAGAATGAAAGAGGAATGTGGAATCATACCTAGGATAGAGCACTATGGTTGCATGGTGGATTTGTTGAGTAGGGCGGGTTTAGTGAAACAAGCGTATGAGTATATTCAGAACATGCCAGTGCAGCCAAATGCAGTTATTTGGAGGACCTTGTTAGGGGCATGTACAATACATGGACATTTGGGTTTGGGAGAGATAGCTAGATCCCACCTATTGAACTTGGAGCCTAAACATAGTGGTGATTATGTGCTTCTTTCAAATCTTTATGCCTCCGAACGTCGTTGGTCTGATGTACAAGTGATAAGGAGGTCAATGCTGAAGGATGGTGTTAAGAAAACCCCTGGCTATAGTCTAGTTGAGTTGGGCAACCGTGTTTATGAATTTACTATGGGTGATAGATCTCATCCTCAAAGTCAGGATGTATATGCACTACTAGAGAAGATTACAGAATTGTTGAAGTTAGAAGGTTATGTGCCTCATACTGCTAATGTACTTGCAGACATAGAGGAAGAGGAGAAGGAACAAGCTTTGTCTTATCATAGTGAAAAAGTTGCAATTGCTTTTATGCTCTTAAATACACCACCAGGGACCCCAATCAGGGTTATGAAGAATTTAAGAGTTTGTGCAGATTGTCATATGGCTATCAAACTCATAGCAAAGATTTACGATAGAGAGATTGTTATCAGGGATCGCAATATCGCAATCGCAATCGCAATGGGGGATCTAGAGAGAATGGCCATAGAACTCAAATGCCCTATCTGTTGGAGTTTGCTCGATTCTGCTGTGTCGCTTACCTGCAATCATCTTTTCTGCAACTCGTGCATTTTCAAGTCCATGAAATCAGCCTCTGCTTGTCCTGTCTGTAAAATTCCTTTCACTCGTCGAGAGGTTCGCCCTGCTCCTCACATGGACAACTTGGTCAGCATATATATAAACATGGAAGCTTCTTCAGGAGTTAATACATTTGTAACCCAGAATGCCCCTGTTACTAACTTATCAGATGGAGAAAAGGAATGTGAAGGTGATGCTGACTCTGGCAAGATGAAAGCTGGTGGAACTCATGAAGGTCGTCCGCAGGAGAAGAAAACCCGGAAGAAAAAGAAGTCTAAGAAGACGGTTCAGGCCAGCATGGAAAGTTCAGGTTCTGAGTTTGCAAAGCCTTCTTTTCCAGCAAAGAAAAGGGTACATGTGCCGCAAAATCTTCTTTCAGAAACTCCAATGAAGAATTTGAAAATTGGAGACTCTCTCAGTGAAATTAACAAAGAGAAAGAGGGAACGGAAAAGGTCCCAGTCAAGGAAAGTGAAAGGCCCCTCCAAAGTGAAAAAGATAATCCTGTTCTTTCGCCTTTCTTTTGGTTGAGAGAGGAAAAAGATGGTGAAATGTTAAGTCAACAAACTGATGAGGATCAAATTATTGATGGCTCAACACCAAATCCTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAGTCCATTCTAATGTTGATCTAATGGTAAGTGCTGGATTAACAAACAATGAAATGTTTGAATGGACACAAAGGCCTTGCTCTCCTGAATTGTTTTCAAGTCCCTCTAAAATGCAGGTCATGGATACTTATGAGGATGATGAAAATCAAGAGGAATTGGTGGCTTCCTCACTAGAGCTGGAGGCAAATCTGCCAAGAGTTGATGCTGACAACATGGAATTTGAGAATCCCAAAGAAGGAAATAGAATGGCTGATGAAGTACCTCCGAGTGTATGTTTTCCTCAAATCAGAAGTTCTGATGATCTAAATGGAATAAAGAAGTCTACAAAAAGAAGGAAGGCTAGAGATAAAAATAAACAAGAGCAGATTGGAGAACCAAAAAATTCATTTGATGAAATGTATGTTGAGGTTACTCAGGAACAAGCATTGGACAATTCTTCTAATCTGGGGAAGGGTAGTAGAAGAGGCAAGAGGGTTTGTTTCAATACCAGTCCAATTCCAACGCCTATAACTGCTTGTACAGTCCCCAATACATTAGGAGTTCAAAGCATTGGTGAAATGAAGAAGGCTAAGAATATAGATATTTTGCCATGTAAACAAGAAAATGAGAAGCATTATGCTCAGGAAATTTCTGGAAAAAGCCAGATGAAAATATCTGGAAAACAAAATATCAATCAAATGAATGAGTTTGCTGGTTCTGATTCATCCATTTTCAGTCTGCGAACAGATAATAACGGGAAGGACTCTAATAGGAGGCAATGCAAAAGCAAGTATTCCAGAAAAACTATATATTGCAGTAAAGAATTGGAAACTACTAAAAGGCAAAAACTTTCCTCGGCTTGTATCTCTAAGACTAAAAACAATGAAGAAATTCTACCTATTGAAAGTATTCATCAAGGTCCTGATGTCAGGGATTTGAATGATACATCAAAAGAGAAACATTGTCCCTTGATGGATCAAACAGTGTTAAGGAAATGTGAGAATCTTGTAAAAAATTATCAATGTGTTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCCTATGGTGCATTACCTTGATGGCAGGCCTGTAACATCAGATTATGAAGGGGGATCTAAAGTCACGCATTGTCACAGGAACTGCACAGAGTGGGCCCCCAATGTATATTTTGATGGTGATTATTCAATAAATCTTGATGCGGAAATAAGTAGAAGTCGAAGAATTAAATGTAGTTTTTGTGGACTAAAAGGCGCCGCACTTGGTTGTTATGAGAAAAGCTGTCGCAGGAGCTTTCATGTTCCTTGTGCCAAGTGGACTTCTCAATGTCGATGGGATACGCAAAACTTTGTCATGTTATGCCCTCTGCATGCTTCCTCCATGTTGCCCTGTGAAGGTTCAGGATCCCAAAAAAGGAGCAAGAAATGCACAGCTAGTGAGGGAAAAGCCCATGGTCCTAAACATGACACAACAAGCCAAAGTCGGGCTGCTTATTTATCATACAAAAAAATTGTACTATGTTGTTCTGCTCTATCCGTGCAGGAGAGGGAAGTTGTTTCCGAATTTGAAAGAGTATCGAAAGCTACAGTTTTGAAAAATTGGGACTCGAGTGTCACCCATGTTATAGCATCAACGGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGTATACTGGAGGGAAAGTGGATTCTCAATATTGAGTGGATCAAAGCTTGCATGAAGGAAATGGGTCCTATTGATGAGGAGTGTTATGAAATTAATGTTGACATCCATGGAATTCGAGATGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCAACCAAAGCTTTTTTATGGCTACAAGTTTTATTTTATGGGAGATTTTATACCTTCATACAAGGGGTATCTGCAAAACCTTGTGGTTGCTGCTGGAGGGATAATTCTGCACAGAAAACCAGTGTCTGGTGACCAAGAATCAACTTCACCAGATATGCATACATACCAAACCCTTATAATTTACAGCCTCGAGCTTCCTGATAAATGTAAGCCTTCGAAAAAGGATACAATTTGCAGCCAAAGGCGTCATGATGCAGAGGTTCTGGCAAGTTCTACAGGTTCAAATGTAGCAAGTAATACATGGGTTCTGAATTCAATTGCAGCCTGCAAACTGCAATACCTTGCTCAATGA

Predicted protein sequences of Glyma13g29225

Limit To All Plant Sequences

>Glyma13g29225.1   sequence type=predicted peptide   gene model=Glyma13g29225   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRNIAIAIAMGDLERMAIELKCPICWSLLDSAVSLTCNHLFCNSCIFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYINMEASSGVNTFVTQNAPVTNLSDGEKECEGDADSGKMKAGGTHEGRPQEKKTRKKKKSKKTVQASMESSGSEFAKPSFPAKKRVHVPQNLLSETPMKNLKIGDSLSEINKEKEGTEKVPVKESERPLQSEKDNPVLSPFFWLREEKDGEMLSQQTDEDQIIDGSTPNPPSFSDLKDSDDEVHSNVDLMVSAGLTNNEMFEWTQRPCSPELFSSPSKMQVMDTYEDDENQEELVASSLELEANLPRVDADNMEFENPKEGNRMADEVPPSVCFPQIRSSDDLNGIKKSTKRRKARDKNKQEQIGEPKNSFDEMYVEVTQEQALDNSSNLGKGSRRGKRVCFNTSPIPTPITACTVPNTLGVQSIGEMKKAKNIDILPCKQENEKHYAQEISGKSQMKISGKQNINQMNEFAGSDSSIFSLRTDNNGKDSNRRQCKSKYSRKTIYCSKELETTKRQKLSSACISKTKNNEEILPIESIHQGPDVRDLNDTSKEKHCPLMDQTVLRKCENLVKNYQCVFCLSSEESEASGPMVHYLDGRPVTSDYEGGSKVTHCHRNCTEWAPNVYFDGDYSINLDAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSQCRWDTQNFVMLCPLHASSMLPCEGSGSQKRSKKCTASEGKAHGPKHDTTSQSRAAYLSYKKIVLCCSALSVQEREVVSEFERVSKATVLKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIEWIKACMKEMGPIDEECYEINVDIHGIRDGPRLGRLRVLNKQPKLFYGYKFYFMGDFIPSYKGYLQNLVVAAGGIILHRKPVSGDQESTSPDMHTYQTLIIYSLELPDKCKPSKKDTICSQRRHDAEVLASSTGSNVASNTWVLNSIAACKLQYLAQ*

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