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Report for Sequence Feature Glyma13g29160

Feature Type:gene_model
Chromosome:Gm13
Start:32078442
stop:32088927
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g29160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18390AT Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10163212-10164309 REVERSE LENGTH=365 SoyBaseE_val: 7.00E-68ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045962GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_D5MRQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: MdTCP2A protein n=1 Tax=Malus x domestica RepID=D5MRQ0_MALDO SoyBaseE_val: 5.00E-130ISS
UniRef100_I1M1H9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1H9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g29160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29160
ParalogEvidenceComments
Glyma15g09910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g219900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g29160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g29160
>Glyma13g29160.1   sequence type=CDS   gene model=Glyma13g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGATGAGATTCAAGCATGTAAGTTCCCAAGAGTTGGAAATGGTAGGAGTAGTGACCAATACCAAGAGGAGGAAGAAGAGGGTGGTGACCTAAGACTTAGAAAAGGTGTTGGTGTTGGTGGTGGTGGTGGAGGTGGAGGAAGTGATGCTAGCACAAACCACTTCCACCAAAGTAGTTGGCACCATTCTTCTAGAATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACCTCAAAAGGGTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTACGACCAACCTAGCAAAGCTGTTGAGTGGTTAATCAAAGCTGCTTCAGAAGCTATCTCTGAGCTTCCTTCTCTCAACAACCCTTTCCCTGATACCCCTAAGCAACTAAGTGATAAGAAAAGGCCTACTAGTGGTGGTGGTCAACAACAACAACAAATACAACAAGGCCACTTTGATGATGCTGATGGAGACACAAGTTACCCCCAAAACCAAAGCCAGAACCTTTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGCTCAGGCTTGTCCCTCTCAAGGTCTGAGATTCGTGTGAACCGTGTTAAGGCAAGGGAGAGGGCTAGGGAGAGAGCTGCTAAAGAAAAAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGAGAGTGAATCTAGCATTGCACATCACCACCATCATCACCATGTGAACAACAACAACCACATGTCTCACACAGCTTCCTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACTGTAACAGTTAACCCCAACACCACCACCACCACCACCACAACAACAACAAGTCCTAATGGGTCATCAGTTCATCAGATCCATGATGGTCATGATCATGAGACTAATCTATTCAACAAGGGAAGGCAACAACAACAACAGCATCATTGGTCTCAAACAGTGACACCTATGGACTACTTCAGCACAGGCCTCTTGGTAGGACCTTCTTCATCATCTGCAAGAACTCAACAACACCAACACCAATCTTCTTCAGCACATTTCCAACTGGGACATGCACATGCCCTTCCAATCTCTCCATTCAGTGGAGAAAACCACTCAGAGCAGCTGCAGCATTTTTCCTTCATGCCAGACCACCTCAACAACATACCAGCTCATCATGTGGTTACATCTTCTTCTGCTTCTCATCAACCCAACGGGGGTGACAACAACTACAACCTCAACTTCAGTATCTCTACATCGACGGGCCTTGCTGGTTACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTCCTCGTTTTTGCCTCATCACCTCCAGAGGTTTCAACCTTTAGACGGATCGTCCAACCTACCTTTCTTTATAGGAGCTGCTGCTCCTTCTTCTGCTCCTCCAACCATGGACAACAACAACAATAATAACAGCAACAACCATCACCACCTTCAGTTCTCACCTGTCTTTGATGGCCGCTTGCAACTCTGCTATGGCGATGGAACAAGGCATTCTGACCACAAGGGGAAGGGAAAGAACTAA
Predicted protein sequences of Glyma13g29160
>Glyma13g29160.1   sequence type=predicted peptide   gene model=Glyma13g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDEIQACKFPRVGNGRSSDQYQEEEEEGGDLRLRKGVGVGGGGGGGGSDASTNHFHQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLNNPFPDTPKQLSDKKRPTSGGGQQQQQIQQGHFDDADGDTSYPQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKEKEKEKEKEKEKESESSIAHHHHHHHVNNNNHMSHTASFTELLTGGIGSTVTVNPNTTTTTTTTTTSPNGSSVHQIHDGHDHETNLFNKGRQQQQQHHWSQTVTPMDYFSTGLLVGPSSSSARTQQHQHQSSSAHFQLGHAHALPISPFSGENHSEQLQHFSFMPDHLNNIPAHHVVTSSSASHQPNGGDNNYNLNFSISTSTGLAGYNNRGTLQSNSPSSSFLPHHLQRFQPLDGSSNLPFFIGAAAPSSAPPTMDNNNNNNSNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN*






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