SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08220 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | c | SoyBase | E_val: 2.00E-106 | ISS |
| GO:0033615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial proton-transporting ATP synthase complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4614 | KOG | Inner membrane protein required for assembly of the F0 sector of ATP synthase | JGI | ISS | |
| PF05176 | PFAM | ATP10 protein | JGI | ISS | |
| UniRef100_I1M1H0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1M1H0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SGD8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T23G18.8 n=1 Tax=Arabidopsis thaliana RepID=Q9SGD8_ARATH | SoyBase | E_val: 3.00E-93 | ISS |
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Glyma13g29120 not represented in the dataset |
Glyma13g29120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g219600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g29120.1 sequence type=CDS gene model=Glyma13g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGGTTTGAGGCGACTGATACGACAGCGTTCAAGTCTCAGAGACTCCTTAGCCGAGAAGGTCCATAGTCCAGTTCCCTCGCAGCATTTGGCACGCCTCACCCCCAAACGCTTCTTCGATCTTCATCAGCTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAGCATGCTGGTAAGATTGCTGTAGCTAATAAATTGATAATACCAGCAATGGTAGCCACAAAGTTTCCTGATTTTGAAGTCAGCTTCACAGATGGTAAAACAATGAAGCTTCCTATCCGTGTTTCTGATCGTGCAGTTGATTCTGATAAATCGTCTGTCCCCAAGGCATCTTTGGTTTGTCTTTCATTTCGAGCAAGCTCCCAGGAAATGATCAATTCTTGGAGTGTGCCTTTTACTGAAGCATTTAGAAAATCAAATGATGTTCATTTATATCAGGTATCATTTATAGATTCGTGGCTTTTATGTCGGGCTCCTATAAAACGTTTGCTTCTCTGGACAATGAAGAAACCTAGTCATCATGAAAGCAAGGATACACTTCAGCAGCAGATAGTGTATTCATTTGGTGACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGGATCGGCGACACAAGATGAACTATCTTCTCTTCTTTCTTGTACATCACTTCTTCTTGATCAGAAATGA
>Glyma13g29120.1 sequence type=predicted peptide gene model=Glyma13g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGLRRLIRQRSSLRDSLAEKVHSPVPSQHLARLTPKRFFDLHQLGNKEAIEKERARLADEMTRGYFADMAEFKKHAGKIAVANKLIIPAMVATKFPDFEVSFTDGKTMKLPIRVSDRAVDSDKSSVPKASLVCLSFRASSQEMINSWSVPFTEAFRKSNDVHLYQVSFIDSWLLCRAPIKRLLLWTMKKPSHHESKDTLQQQIVYSFGDHYYFRKELRILNLLTGYIFLLDNFGRVRWQGFGSATQDELSSLLSCTSLLLDQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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