Glyma13g29040 - SoyBase

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Report for Sequence Feature Glyma13g29040

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31995911
stop:	31998679
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30090	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:10559746-10560942 REVERSE LENGTH=398	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24411	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24411:SF196	Panther		JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7IP74	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7IP74_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M1G3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1G3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29040

Paralog	Evidence	Comments
Glyma15g10000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g218800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29040

Limit To All Plant Sequences

>Glyma13g29040.1   sequence type=CDS   gene model=Glyma13g29040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCGTGTTAGATTTTCATCTCAGCAGGCACCAGTACACAAGCTAGGAGATCCTCAAATGACATTATCTCCTAAGTTTAGGTTAGCTGTGATCCAATCTGCTTTGGCAAATCCATCACCTGAGTTAGAGCTTTCTCTCAGAGAAGAACCCTTAATTCCTGGTCTTCCTGATGATGTTGCTCTCAATTGTCTTCTCCGGCTTCCGGTTCAGAGTCACTCATCTTGTAGAGCTGTGTGCAAGAGGTGGCATATGCTACTTGGTAACAAAGAGAGGTTTTTCACCAATAGGAAGCAATTTGGTTTGAAAGACCCTTGGCTTTTTGTATTTGCTTACCATAAGTGCACTGGGAAGATCCAGTGGCAGGTGCTTGACCTCACACACTTTTCTTGGCACACTATCCCTGCGATGCCTTGCAAGGACAAGGTTTGCCCTCATGGTTTTAGGTGTGTTTCGATCCCCCCTGATGGCACGCTGTTTGTTTGTGGTGGCATGGTCTCTGATGTGGATTGCCCTCTTGACTTGGTGTTGAAATACGAGATGCAGAAGAATAGATGGACTGTGATGAATAGGATGATCACTGCTAGGTCATTTTTTGCTAGTGGAGTGATTGATGGTATGATTTATGTAGCTGGGGGAAATAGTACCGATCTTTATGAGCTTGATTCTGCTGAGGTGTTGGATCCTTTCAATGGGAGTTGGCACCCTATTGCCTACATGGGAACGAACATGGCATCTTATGATGCTGCAGTGCTCAATGGGAAACTTCTGGTTACTGAAGGATGGTTGTGGCCTTTTTATGTCTCACCAAGAGGCCAGGTCTATGATCCTAGAACTAATAACTGGGAAAATATGGCTGTTGGTCTCAGAGAAGGGTGGACCGGTTCAAGTGTGGTTGTTTACGGGCACTTATTTGTTGTTTCGGAGCTCGAAAGAATGAAGCTAAAGGTTTATGAACCGGAAAATGATTCCTGGGAAGCCATAGAAGGGCCTCCTTTGCCTGAGCAAATATGCAAGCCTTTTGCTGTGAATGCTTGTGATTGTCATATTTATGTTGTGGGTCGAAATCTTCTGGTTGCCGTTGGCCATATCACTAGACTGAACCCAAAAGAAAGCTGTAAGGAAAAATGGAACTTCAGTGTTCGATGGCATGTAATTGATGCACCAGAAAGCTTGTCAGATCTGACTCCTTCAAGCTCTCAGGTGCTGTTTGCTTAG

Predicted protein sequences of Glyma13g29040

Limit To All Plant Sequences

>Glyma13g29040.1   sequence type=predicted peptide   gene model=Glyma13g29040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVIQSALANPSPELELSLREEPLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQFGLKDPWLFVFAYHKCTGKIQWQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSIPPDGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNRMITARSFFASGVIDGMIYVAGGNSTDLYELDSAEVLDPFNGSWHPIAYMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNNWENMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYEPENDSWEAIEGPPLPEQICKPFAVNACDCHIYVVGRNLLVAVGHITRLNPKESCKEKWNFSVRWHVIDAPESLSDLTPSSSQVLFA*

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