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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30000 | AT | Annotation by Michelle Graham. TAIR10: alpha-mannosidase 3 | chr1:10509532-10512320 REVERSE LENGTH=624 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006491 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-glycan processing | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0004559 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity | SoyBase | N/A | ISS |
| GO:0004571 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG2431 | KOG | 1, 2-alpha-mannosidase | JGI | ISS | |
| PTHR11742 | Panther | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED | JGI | ISS | |
| PTHR11742:SF7 | Panther | ENDOPLASMIC RETICULUM MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE | JGI | ISS | |
| PF01532 | PFAM | Glycosyl hydrolase family 47 | JGI | ISS | |
| UniRef100_G7IPW7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mannosyl-oligosaccharide 1,2-alpha-mannosidase n=1 Tax=Medicago truncatula RepID=G7IPW7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M1F2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1F2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g28910 not represented in the dataset |
Glyma13g28910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g10130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g217900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g28910.2 sequence type=transcript gene model=Glyma13g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTAAAACGTAGTGATAAGTCAATGCGTTAAAAGAAAGAAAGAAAGAAAATTATGCGAGATGCAGCCATTGATCTGAAAGTTCCTATCAGACTCAGACATAGATTGTAACATCCCCTTTTCCCACAGCGGAGAAACCTCTCCTCTCTCTCTGGTCGCATGAGATGATACTACATAAGCGTAGAATCCTACGCAATCGAATTCCCAGCTAGATTGTCTCTCTGTCTCAATTAGAATTTGAATTGGTGATCGGATCCAACACAACACAACACCATGTCCAAGTCTTTGCCCTACTCCACCAAAGATGTTCACTACGACAACGCCAAGTTTCGCCCCCGCTCTTTCTTCAAGGTTGTTACTCAGAACTTACTCACCAGTAACCTAAGGCGTGATTGTGGTAGCTGTAGTACAGGAAAGTTTCTATTTTTGCTATTGATCTTTGGTGTGGCTTATCTTATGCTGGCACATGCCAGTTCGAGTGGTGTAGTTTCTGATGATCAAGCAATTGTGAATAGAAAGAGTTTTTATGCAAATAGCAGCATTGTTAATGGTGCTGGCAAAATAAAGAGGCTCTGGAGACGGCCACCGAGGCTCCCTCCTCGATTCTCGCCAGATGAAACAGGAACTGGTAATGGAAATGGACATGTATTGGGAAATCCGGATGTTGTTAGGTCAATGTGGATTGCTAGGCAAAAGAAAGTCAAGGAAGCTTTTATTCATGCTTGGTCTGGATACAAGAAATTCGCCATGGGTTATGATGAACTTATGCCTCTCAGCCAGCATGGAATTGATGGATTAGGTGGGTTGGGGGCTACAGTGGTGGATGCTCTCGATACGGCTATGATCATGGGTCTTGATGAGGTTGTGGCTGAAGCTGGATCCTGGGTTGAAGAACAACTTTCTGAGAGAATCAGTAAAAAGGGTCAAGTGAATTTATTTGAAACCACAATTCGGGTTTTGGGTGGGCTTTTAAGTGCGTATCATCTAAGTGGTGGGGAAAAAGGAACAAACTTAACTCATGCAGGACCTAAACCAGCAGTTTATCTAGAAATTGCTAAGGATTTGGCTGACCGTCTGTTATCTGCTTTTACAGCCAGTCCAACTGCTATTCCGTTTAGTGATGTTATTCTGCATGACAAGTCGGCACATCCAGCTCCTGGTGGACTGAGTAGCACATCGGAAGTTTCCACTTTACAGCTTGAGTTTAATTATCTCAGTCAGATATCTGGTGATCAGAAATATAGTTTGGAAGCAATGAAAGTCATGGAGCACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAGCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGTGACAGTTACTATGAGTACTTAATCAAAGTATGGCTTCAGAGTGGAGCTAGTAGCAACACTAATACATCATTCCTATATGAAATGTATAAGGAAGCAATGAATGGTGTTAGACATCTTCTTGTTCGGAAATCTATCCCAAATGGACTAGTTTTTGTTGGAGAATTGCCTTATGGATCTAACAGTGGTTTCAGCCCAAAAATGGATCACCTGGTGTGTTTCCTACCTGGTACACTTGCAATTGGTGCCACTAAAGGCCTTACAAAGAAACAGGCAATGGAAAACAATATGCTTAACTTTGAAGACCTAGAAAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTGAGACCGTGGAGTCATTGTTTGTTTTGTACCGTATCACAGAAGATCCAAAGTATGCTTTTACCCTTCTTATGTATAAGATTAGTTTATACTTCTATTTCTTCTGGCCATGTGTAAGAAACAGTGAAAACAAGCTTAATTTTGTTTTTCCTGATTCTTTTTTCTTTGTAATAATCAGATATGAATATTTTGTGTTACAGATATCGGGAATGGGGTTGGCAAATCTTTGAAGCTTTTGAAAATCACACAAAGGTTGATACTGGTGGATATTGTTCTCTGGACGATGTAACTAGTGTTCCTCCTCATAGAAGAGACAAAATGGAGACTTTCTTTCTAGGAGAAACACTTAAGTATTTCTACTTGCTTTTTGCGGACAGCTCTCTTATTCCTCTGGATAAATTTGTTTTTAACACAGAAGCACATCCTATACCAATCAATTTGAAGAAATGAGTATAATCATCAAAGGCATTCAACAGAGTTATTAGAAATACGGATTCTGTCACCCTGGTCTCACAAAGTGAGATGCTTCTTTGAAGTCAGTCTAGCATCTCTTACACTGACCAAGAGCACTTCTGGTTATGTATAAGATTAGCTGGGTTCTCAGTGATAATAAATAACTGTGAAATATTGTTTGAATCATCCAATACATCAGCAAACACATTTTAGAGACCGCCAATTGATTATGACTCATTTTCTTGGATTTATAACCAGCCCTATCTAAATGGGATTGTAAATTTTGTTTCAAGTCATGGACAAAGAGCAGCTTTTGTAATCGAATTGTATGATTTTCCAATATGTTTTTGGATGCTTAGCATTTTTGTGACTTGATTACACGGTTGTCATTACGTTCCTAAAGATGCGATCTATCTTCGTAACATCATGAACTCAAATCTTCATTATTGCTGCACTGAAGAAAGAGGTGATCTCCATCCCGGATGACATTTATGTCATCTATCTCTGCATTCTCTGTATTAATTACTTTTGTAGGGTTGAAGCCACCAAATTTGTCACCTGCAG
>Glyma13g28910.1 sequence type=CDS gene model=Glyma13g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAAGTCTTTGCCCTACTCCACCAAAGATGTTCACTACGACAACGCCAAGTTTCGCCCCCGCTCTTTCTTCAAGGTTGTTACTCAGAACTTACTCACCAGTAACCTAAGGCGTGATTGTGGTAGCTGTAGTACAGGAAAGTTTCTATTTTTGCTATTGATCTTTGGTGTGGCTTATCTTATGCTGGCACATGCCAGTTCGAGTGGTGTAGTTTCTGATGATCAAGCAATTGTGAATAGAAAGAGTTTTTATGCAAATAGCAGCATTGTTAATGGTGCTGGCAAAATAAAGAGGCTCTGGAGACGGCCACCGAGGCTCCCTCCTCGATTCTCGCCAGATGAAACAGGAACTGGTAATGGAAATGGACATGTATTGGGAAATCCGGATGTTGTTAGGTCAATGTGGATTGCTAGGCAAAAGAAAGTCAAGGAAGCTTTTATTCATGCTTGGTCTGGATACAAGAAATTCGCCATGGGTTATGATGAACTTATGCCTCTCAGCCAGCATGGAATTGATGGATTAGGTGGGTTGGGGGCTACAGTGGTGGATGCTCTCGATACGGCTATGATCATGGGTCTTGATGAGGTTGTGGCTGAAGCTGGATCCTGGGTTGAAGAACAACTTTCTGAGAGAATCAGTAAAAAGGGTCAAGTGAATTTATTTGAAACCACAATTCGGGTTTTGGGTGGGCTTTTAAGTGCGTATCATCTAAGTGGTGGGGAAAAAGGAACAAACTTAACTCATGCAGGACCTAAACCAGCAGTTTATCTAGAAATTGCTAAGGATTTGGCTGACCGTCTGTTATCTGCTTTTACAGCCAGTCCAACTGCTATTCCGTTTAGTGATGTTATTCTGCATGACAAGTCGGCACATCCAGCTCCTGGTGGACTGAGTAGCACATCGGAAGTTTCCACTTTACAGCTTGAGTTTAATTATCTCAGTCAGATATCTGGTGATCAGAAATATAGTTTGGAAGCAATGAAAGTCATGGAGCACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAGCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGTGACAGTTACTATGAGTACTTAATCAAAGTATGGCTTCAGAGTGGAGCTAGTAGCAACACTAATACATCATTCCTATATGAAATGTATAAGGAAGCAATGAATGGTGTTAGACATCTTCTTGTTCGGAAATCTATCCCAAATGGACTAGTTTTTGTTGGAGAATTGCCTTATGGATCTAACAGTGGTTTCAGCCCAAAAATGGATCACCTGGTGTGTTTCCTACCTGGTACACTTGCAATTGGTGCCACTAAAGGCCTTACAAAGAAACAGGCAATGGAAAACAATATGCTTAACTTTGAAGACCTAGAAAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTGAGACCGTGGAGTCATTGTTTGTTTTGTACCGTATCACAGAAGATCCAAAATATCGGGAATGGGGTTGGCAAATCTTTGAAGCTTTTGAAAATCACACAAAGGTTGATACTGGTGGATATTGTTCTCTGGACGATGTAACTAGTGTTCCTCCTCATAGAAGAGACAAAATGGAGACTTTCTTTCTAGGAGAAACACTTAAGTATTTCTACTTGCTTTTTGCGGACAGCTCTCTTATTCCTCTGGATAAATTTGTTTTTAACACAGAAGCACATCCTATACCAATCAATTTGAAGAAATGA >Glyma13g28910.2 sequence type=CDS gene model=Glyma13g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAAGTCTTTGCCCTACTCCACCAAAGATGTTCACTACGACAACGCCAAGTTTCGCCCCCGCTCTTTCTTCAAGGTTGTTACTCAGAACTTACTCACCAGTAACCTAAGGCGTGATTGTGGTAGCTGTAGTACAGGAAAGTTTCTATTTTTGCTATTGATCTTTGGTGTGGCTTATCTTATGCTGGCACATGCCAGTTCGAGTGGTGTAGTTTCTGATGATCAAGCAATTGTGAATAGAAAGAGTTTTTATGCAAATAGCAGCATTGTTAATGGTGCTGGCAAAATAAAGAGGCTCTGGAGACGGCCACCGAGGCTCCCTCCTCGATTCTCGCCAGATGAAACAGGAACTGGTAATGGAAATGGACATGTATTGGGAAATCCGGATGTTGTTAGGTCAATGTGGATTGCTAGGCAAAAGAAAGTCAAGGAAGCTTTTATTCATGCTTGGTCTGGATACAAGAAATTCGCCATGGGTTATGATGAACTTATGCCTCTCAGCCAGCATGGAATTGATGGATTAGGTGGGTTGGGGGCTACAGTGGTGGATGCTCTCGATACGGCTATGATCATGGGTCTTGATGAGGTTGTGGCTGAAGCTGGATCCTGGGTTGAAGAACAACTTTCTGAGAGAATCAGTAAAAAGGGTCAAGTGAATTTATTTGAAACCACAATTCGGGTTTTGGGTGGGCTTTTAAGTGCGTATCATCTAAGTGGTGGGGAAAAAGGAACAAACTTAACTCATGCAGGACCTAAACCAGCAGTTTATCTAGAAATTGCTAAGGATTTGGCTGACCGTCTGTTATCTGCTTTTACAGCCAGTCCAACTGCTATTCCGTTTAGTGATGTTATTCTGCATGACAAGTCGGCACATCCAGCTCCTGGTGGACTGAGTAGCACATCGGAAGTTTCCACTTTACAGCTTGAGTTTAATTATCTCAGTCAGATATCTGGTGATCAGAAATATAGTTTGGAAGCAATGAAAGTCATGGAGCACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAGCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGTGACAGTTACTATGAGTACTTAATCAAAGTATGGCTTCAGAGTGGAGCTAGTAGCAACACTAATACATCATTCCTATATGAAATGTATAAGGAAGCAATGAATGGTGTTAGACATCTTCTTGTTCGGAAATCTATCCCAAATGGACTAGTTTTTGTTGGAGAATTGCCTTATGGATCTAACAGTGGTTTCAGCCCAAAAATGGATCACCTGGTGTGTTTCCTACCTGGTACACTTGCAATTGGTGCCACTAAAGGCCTTACAAAGAAACAGGCAATGGAAAACAATATGCTTAACTTTGAAGACCTAGAAAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTGAGACCGTGGAGTCATTGTTTGTTTTGTACCGTATCACAGAAGATCCAAAGTATGCTTTTACCCTTCTTATGTATAAGATTAGTTTATACTTCTATTTCTTCTGGCCATGTGTAAGAAACAGTGAAAACAAGCTTAATTTTGTTTTTCCTGATTCTTTTTTCTTTGTAATAATCAGATATGAATATTTTGTGTTACAGATATCGGGAATGGGGTTGGCAAATCTTTGA
>Glyma13g28910.1 sequence type=predicted peptide gene model=Glyma13g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKSLPYSTKDVHYDNAKFRPRSFFKVVTQNLLTSNLRRDCGSCSTGKFLFLLLIFGVAYLMLAHASSSGVVSDDQAIVNRKSFYANSSIVNGAGKIKRLWRRPPRLPPRFSPDETGTGNGNGHVLGNPDVVRSMWIARQKKVKEAFIHAWSGYKKFAMGYDELMPLSQHGIDGLGGLGATVVDALDTAMIMGLDEVVAEAGSWVEEQLSERISKKGQVNLFETTIRVLGGLLSAYHLSGGEKGTNLTHAGPKPAVYLEIAKDLADRLLSAFTASPTAIPFSDVILHDKSAHPAPGGLSSTSEVSTLQLEFNYLSQISGDQKYSLEAMKVMEHMKTLPKIEGLVPIYISPHSGEFSGENIRLGSRGDSYYEYLIKVWLQSGASSNTNTSFLYEMYKEAMNGVRHLLVRKSIPNGLVFVGELPYGSNSGFSPKMDHLVCFLPGTLAIGATKGLTKKQAMENNMLNFEDLENLKLAEDLTKTCFEMYAVTSTGLAPEIAYFHTEEFSEEGHDGGNKSSEFVNDIIIKPADRHNLLRPETVESLFVLYRITEDPKYREWGWQIFEAFENHTKVDTGGYCSLDDVTSVPPHRRDKMETFFLGETLKYFYLLFADSSLIPLDKFVFNTEAHPIPINLKK* >Glyma13g28910.2 sequence type=predicted peptide gene model=Glyma13g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKSLPYSTKDVHYDNAKFRPRSFFKVVTQNLLTSNLRRDCGSCSTGKFLFLLLIFGVAYLMLAHASSSGVVSDDQAIVNRKSFYANSSIVNGAGKIKRLWRRPPRLPPRFSPDETGTGNGNGHVLGNPDVVRSMWIARQKKVKEAFIHAWSGYKKFAMGYDELMPLSQHGIDGLGGLGATVVDALDTAMIMGLDEVVAEAGSWVEEQLSERISKKGQVNLFETTIRVLGGLLSAYHLSGGEKGTNLTHAGPKPAVYLEIAKDLADRLLSAFTASPTAIPFSDVILHDKSAHPAPGGLSSTSEVSTLQLEFNYLSQISGDQKYSLEAMKVMEHMKTLPKIEGLVPIYISPHSGEFSGENIRLGSRGDSYYEYLIKVWLQSGASSNTNTSFLYEMYKEAMNGVRHLLVRKSIPNGLVFVGELPYGSNSGFSPKMDHLVCFLPGTLAIGATKGLTKKQAMENNMLNFEDLENLKLAEDLTKTCFEMYAVTSTGLAPEIAYFHTEEFSEEGHDGGNKSSEFVNDIIIKPADRHNLLRPETVESLFVLYRITEDPKYAFTLLMYKISLYFYFFWPCVRNSENKLNFVFPDSFFFVIIRYEYFVLQISGMGLANL*
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