SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18290 | AT | Annotation by Michelle Graham. TAIR10: potassium channel in Arabidopsis thaliana 2 | chr4:10115418-10118477 FORWARD LENGTH=697 | SoyBase | E_val: 0 | ISS |
| GO:0006811 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ion transport | SoyBase | N/A | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0010118 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal movement | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005242 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity | SoyBase | N/A | ISS |
| GO:0005249 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: voltage-gated potassium channel activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| KOG0500 | KOG | Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins | JGI | ISS | |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | ISS | |
| PTHR10217:SF6 | Panther | EAG-RELATED VOLTAGE-GATED POTASSIUM CHANNEL | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| PF00520 | PFAM | Ion transport protein | JGI | ISS | |
| PF11834 | PFAM | Domain of unknown function (DUF3354) | JGI | ISS | |
| UniRef100_G7IPW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel n=1 Tax=Medicago truncatula RepID=G7IPW9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C604 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C604 related cluster n=1 Tax=unknown RepID=UPI000233C604 | SoyBase | E_val: 0 | ISS |
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Glyma13g28901 not represented in the dataset |
Glyma13g28901 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g10140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g217800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g28901.1 sequence type=CDS gene model=Glyma13g28901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGTTTCTTGTGTTAAAAACTTCTTCCAGAGGTTCTGGCAAGATGAATTTCAAACGGGAAATATTCCCCATGGAAGCTTTTTGGCCAATGATGATCTCCTTCCATCTCTTGGAGCTAGGATAAACCAGGAAACTAGACTTAGAAGATACATAATCTCTCCTTTCCATCCTCGCTATAGGGCTTGGGAGTTGGTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCATTTCTTCCTTACAAGGAAAATGCTCTATTCATCGCAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGATCGCCATTCTTATCTTCTTGTTGATGATCCAAAGAAGATTGCGATCAGGTACATATCTACCTGGTTTGCTTTTGATGTCTGCTCAACAATACCATTTCAATCCTTCAGCTTCCTCTTCAATCATAGCAGTGAACTTGGCTTCAAAGTTCTTAACATGTTTCGGTTATGGAGGTTGAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTTTGGACTAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTACGGTGCATTGTGCGGGATGCTTTAACTATCTTATTGCAGATAGGTATCCAGATTCCAAAAGAACATGGATTGGTGCAGTGTACCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCCATTGTCACTCTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACGAGAGAGATGCTGTTTGATATAGCTTACATGCTCTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAGCCGTACCAGAAATTTTAGGGACACAGTGAAAGCAGCTTCTGAATTTGCTTCAAGAAATCATTTGCCTCATCGCATTCAGGATCAAATGTTGTCACATATATGTTTGAGGTTCAAAACAGAAGGACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTCCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCCAACTGGTTTCAGATATGGAAGCTGAGTATTTCCCACCCAAGGAGGATGTGATACTGCAAAACGAGTCTTCCACAGAACTTTATGTGCTGGTTTCTGGGGTAGTGGATCTGGTTCGCTACATCGATGGGCATGATCATGTTCATGGGAAGGCAGCTGCAGTAGATGCATTTGGAGAGATTGGAGTTTTATATCATATACCACAGCCTTTCACAGTTCGGACCACAGAACTTTCTCAGATTTTAAGAATCAACAAAACATCCTTAATGAATGTCTTACACGCAAATCCAGGAGATGCACAAATTATAATGGATAACCTTTTAATGAGATTAAAGGGGCGTGAAGGTTTTGGCTTTGAATATCCATGCACAGATTCTGGACGGTTTCCACATGAAGTGCTTCAAGGAGGTAACACGAGAGGAGGCCCTTCTCATGAGTGTACAAATAATTCACTTGAGCATTCATTAATGCATGAAGGAGAGTGCATATATATTGGAAACTCGGAGACCAGTTTGCATAAGGGGACCAATGATGATCATTTAGTCAGCAAACATAACATGATCCCTGAGCATGGTAGAAGAGATATTCATGCCCCTGCAAATAAAGGGAATCTAGACATTGTTGAAATTCTGCTTGAAAGAGATGCATATCCTATCCCAAATTCCTTAGGGATGACACAAAAAGCTCAAGTAAAACGGCCAAAAAACAAGAGCATTTGTGCCCAAAAAATGAGTTGTGAAAATGAGAAGTTAGATGAATTTAGAATACAGATAGCAGAGCCAAAAATCCTTGACCTTGACAGGAATGGCTCGACCAGAAACAGAAGACAAGATGGTATTAGATCTATCAAGTTCCCATTAGAGAAAACAAACACAAACTCCAATTCAAGAAATTCTAACTGTCCAAGTGATAGAGAATCGGCAAGGCTCACCAAGAAGAGAGTAACAATCCATTTGCTACACAGCGGGAGTACCTCACGAGGTCAGCATGGAAAATTAATAATCCTGCCTGATTCATTAGAAGAGCTGCTCCAAATTGCTGGTGACAAATTTGGTGGCTTCAACCCTACAAAAGTAATTAATACAGAGAATGCAGAGATAGATGACATAAATGTCATCCGGGATGGAGATCACCTCTTTCTTCAGTGCAGCAATAATGAAGATTTGAGTTCATGA
>Glyma13g28901.1 sequence type=predicted peptide gene model=Glyma13g28901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVSCVKNFFQRFWQDEFQTGNIPHGSFLANDDLLPSLGARINQETRLRRYIISPFHPRYRAWELVLVVLVIYSAWICPFEFAFLPYKENALFIADNIVNGFFAIDIVLTFFVAYLDRHSYLLVDDPKKIAIRYISTWFAFDVCSTIPFQSFSFLFNHSSELGFKVLNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFTVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLVSDMEAEYFPPKEDVILQNESSTELYVLVSGVVDLVRYIDGHDHVHGKAAAVDAFGEIGVLYHIPQPFTVRTTELSQILRINKTSLMNVLHANPGDAQIIMDNLLMRLKGREGFGFEYPCTDSGRFPHEVLQGGNTRGGPSHECTNNSLEHSLMHEGECIYIGNSETSLHKGTNDDHLVSKHNMIPEHGRRDIHAPANKGNLDIVEILLERDAYPIPNSLGMTQKAQVKRPKNKSICAQKMSCENEKLDEFRIQIAEPKILDLDRNGSTRNRRQDGIRSIKFPLEKTNTNSNSRNSNCPSDRESARLTKKRVTIHLLHSGSTSRGQHGKLIILPDSLEELLQIAGDKFGGFNPTKVINTENAEIDDINVIRDGDHLFLQCSNNEDLSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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