Glyma13g28880 - SoyBase

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Report for Sequence Feature Glyma13g28880

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31844610
stop:	31849725
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46250	AT	Annotation by Michelle Graham. TAIR10: RNA-binding protein \| chr5:18755388-18758056 FORWARD LENGTH=422	SoyBase	E_val: 1.00E-114	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1855	KOG	Predicted RNA-binding protein	JGI		ISS
PTHR22792	Panther	LUPUS LA RIBONUCLEOPROTEIN	JGI		ISS
PTHR22792:SF37	Panther		JGI		ISS
PF05383	PFAM	La domain	JGI		ISS
UniRef100_I1M1E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1E7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q94A38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g46250/MPL12_3 n=2 Tax=Arabidopsis thaliana RepID=Q94A38_ARATH	SoyBase	E_val: 7.00E-112	ISS

Expression Patterns of Glyma13g28880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g28880 not represented in the dataset	Glyma13g28880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28880

Paralog	Evidence	Comments
Glyma15g10160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g217600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28880

Limit To All Plant Sequences

>Glyma13g28880.2   sequence type=transcript   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTCCTTAAAAAATTATAGCAAAAATGAAAAAAAAGGACGGTGACTTGAACACGGTGGTGATGACGAAGCAAAATGTCAACAAGTATCTTGGGCTATAAAAGGATCTGATCTGAGAAACGGAAACACTGTGGAGACCGAAAGGTCGGAACATAAGGCGGGGAAGAGTTAGTTTCTTCTCTCTTCGATGGAAGGCGGGGAAGAGGTTCTCCCTTCGGCCACTGCCACCTCCGCCGCCACCGGCAATCCCACCGCTTCGCCTCCTCCGCTCGCTGATCTTGTCGGTGCTCCCGATCTCGCTGCTGCCTCGGACGACGTCGTTACCCAACCTGAAATTCACGCGCTGATTTCAGACGAAGAGCACGATCACGAGCATGAACATGACGATGACCTCGAGCACGAGCACGATCAGCATGAGCATGACCACCACCACGAGGACCGCGATGATCACGCCGCTGTGGCCGCTGTCTCCTTGGAAGATCTCAAACTCAAGATCATTAAGCAGGCGGAGTATTATTTCAGCGATGAAAACCTGCCTACTGATAAGTATCTGTTGGGTTTCGTCAAGAGGAACAAGGAAGGGTTTGTTCCTGTATCAGTAATTGCTTCTTTTAGAAAAATAAAGAAGCTCACGCGAGACCATGCATTTATTGTTGCTGCACTGAAGGAGTCTTCACTGCTTGTATGATTCTTCCTTCCTTGTTTGTCAACATGAACTGCATTGCAATCTATACTTCAAGTCCTAAGCAAAAAATTCTCCCATGGGGACTGCAGGTTGTTAGTGGTGATGGGAGAAGGGTCAAGCGGCTCAATCCACTTCGTTTCAATGAATCTAGAGATCATAAGTTATATACTGTTTTGGTAGAGAATTTGCCAGAGGATCATTCAAAGAAGAACATTCAACAAATATTCCATGAAGCTGGAAATATAAAGAGGATAACCATTCATGACCCACATTCTACTTCAGAGTCTGCAAAACAACATAACAAGCAAGAAATGCTAATTAGTAATAAGTTACACGCTCTTGTGGAATATGAGACTATGGAGGCTGCTGAGAAAGCAGTGGCTATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAACTTCTCAAGGGAATGGGGAAGTATGGACACAAAAAACAAGCTTGGAAAGGACATCATTCTGAGAAGAATAGCTCAAGGCCTGAACAAACAGGAGATGAGGAGAATCATGGCTCTAATGATCATCATGAAGATACCCATGAGGAAGAAGATGGGGATCATTTGTCAAAGGATAAGGGTGGGCAGAGGTATAGAAATCAAGGAAGATCAAGAAAACATAAATATCGTGCTGGAAATGGAATGGGCCATGGAAGTGCACCATCAACTCATGCTGCTGAAGCATCAAAGTCACCTCCTGGACCCAGAATGCCAGATGGAACACGTGGCTTCGCAGTTGGACGAGGTCGGCCTCCTGTCCCTGCTTCGAATTAGCAAGATTTGACACAACACGAGGGATTGTATTTAGCAGTATTATGTGGTCCGATGTTTTAGTGATGGTACTAGTTTTAATCTGGGTCCCTATGCGTGTTCGGTTGAGTCAACATGGGTTTGTTGGACTGTTAAATTATGCATTCAATCTTTGGAAGCGAGTGTTGGTGGTGAAGTACATGCCCATTTTAAGATTATTAGGCTGGGAAACATAGAACTGTTTTTGTTGTGGTAATCCTCACCTTACGAGGATTCTGTGTAACAAAATCATATCGAGAAATTTGTTAATGGGGATGAAAGAAAGCTGTGTTTGATACCAATTGAAAATTTCTAGGTTGACAGTATAATGGTCTAGTTAACTATGTACCCATTTTTTTTCTTCTCAAGATAAGAATAAGAATAATTATAATATAGGC

>Glyma13g28880.3   sequence type=transcript   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTCCTTAAAAAATTATAGCAAAAATGAAAAAAAAGGACGGTGACTTGAACACGGTGGTGATGACGAAGCAAAATGTCAACAAGTATCTTGGGCTATAAAAGGATCTGATCTGAGAAACGGAAACACTGTGGAGACCGAAAGGTCGGAACATAAGGCGGGGAAGAGTTAGTTTCTTCTCTCTTCGATGGAAGGCGGGGAAGAGGTTCTCCCTTCGGCCACTGCCACCTCCGCCGCCACCGGCAATCCCACCGCTTCGCCTCCTCCGCTCGCTGATCTTGTCGGTGCTCCCGATCTCGCTGCTGCCTCGGACGACGTCGTTACCCAACCTGAAATTCACGCGCTGATTTCAGACGAAGAGCACGATCACGAGCATGAACATGACGATGACCTCGAGCACGAGCACGATCAGCATGAGCATGACCACCACCACGAGGACCGCGATGATCACGCCGCTGTGGCCGCTGTCTCCTTGGAAGATCTCAAACTCAAGATCATTAAGCAGGCGGAGTATTATTTCAGCGATGAAAACCTGCCTACTGATAAGTATCTGTTGGGTTTCGTCAAGAGGAACAAGGAAGGGTTTGTTCCTGTATCAGTAATTGCTTCTTTTAGAAAAATAAAGAAGCTCACGCGAGACCATGCATTTATTGTTGCTGCACTGAAGGAGTCTTCACTGCTTGTTGTTAGTGGTGATGGGAGAAGGGTCAAGCGGCTCAATCCACTTCGTTTCAATGAATCTAGAGATCATAAGTTATATACTGTTTTGGTAGAGAATTTGCCAGAGGATCATTCAAAGAAGAACATTCAACAAATATTCCATGAAGCTGGAAATATAAAGAGGATAACCATTCATGACCCACATTCTACTTCAGAGTCTGCAAAACAACATAACAAGCAAGAAATGCTAATTAGTAATAAGTTACACGCTCTTGTGGAATATGAGACTATGGAGGCTGCTGAGAAAGCAGGGAAGTATGGACACAAAAAACAAGCTTGGAAAGGACATCATTCTGAGAAGAATAGCTCAAGGCCTGAACAAACAGGAGATGAGGAGAATCATGGCTCTAATGATCATCATGAAGATACCCATGAGGAAGAAGATGGGGATCATTTGTCAAAGGATAAGGGTGGGCAGAGGTATAGAAATCAAGGAAGATCAAGAAAACATAAATATCGTGCTGGAAATGGAATGGGCCATGGAAGTGCACCATCAACTCATGCTGCTGAAGCATCAAAGTCACCTCCTGGACCCAGAATGCCAGATGGAACACGTGGCTTCGCAGTTGGACGAGGTCGGCCTCCTGTCCCTGCTTCGAATTAGCAAGATTTGACACAACACGAGGGATTGTATTTAGCAGTATTATGTGGTCCGATGTTTTAGTGATGGTACTAGTTTTAATCTGGGTCCCTATGCGTGTTCGGTTGAGTCAACATGGGTTTGTTGGACTGTTAAATTATGCATTCAATCTTTGGAAGCGAGTGTTGGTGGTGAAGTACATGCCCATTTTAAGATTATTAGGCTGGGAAACATAGAACTGTTTTTGTTGTGGTAATCCTCACCTTACGAGGATTCTGTGTAACAAAATCATATCGAGAAATTTGTTAATGGGGATGAAAGAAAGCTGTGTTTGATACCAATTGAAAATTTCTAGGTTGACAGTATAATGGTCTAGTTAACTATGTACCCATTTTTTTTCTTCTCAAGATAAGAATAAGAATAATTATAATATAGGC

Coding sequences of Glyma13g28880

Limit To All Plant Sequences

>Glyma13g28880.1   sequence type=CDS   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCGGGGAAGAGGTTCTCCCTTCGGCCACTGCCACCTCCGCCGCCACCGGCAATCCCACCGCTTCGCCTCCTCCGCTCGCTGATCTTGTCGGTGCTCCCGATCTCGCTGCTGCCTCGGACGACGTCGTTACCCAACCTGAAATTCACGCGCTGATTTCAGACGAAGAGCACGATCACGAGCATGAACATGACGATGACCTCGAGCACGAGCACGATCAGCATGAGCATGACCACCACCACGAGGACCGCGATGATCACGCCGCTGTGGCCGCTGTCTCCTTGGAAGATCTCAAACTCAAGATCATTAAGCAGGCGGAGTATTATTTCAGCGATGAAAACCTGCCTACTGATAAGTATCTGTTGGGTTTCGTCAAGAGGAACAAGGAAGGGTTTGTTCCTGTATCAGTAATTGCTTCTTTTAGAAAAATAAAGAAGCTCACGCGAGACCATGCATTTATTGTTGCTGCACTGAAGGAGTCTTCACTGCTTGTTGTTAGTGGTGATGGGAGAAGGGTCAAGCGGCTCAATCCACTTCGTTTCAATGAATCTAGAGATCATAAGTTATATACTGTTTTGGTAGAGAATTTGCCAGAGGATCATTCAAAGAAGAACATTCAACAAATATTCCATGAAGCTGGAAATATAAAGAGGATAACCATTCATGACCCACATTCTACTTCAGAGTCTGCAAAACAACATAACAAGCAAGAAATGCTAATTAGTAATAAGTTACACGCTCTTGTGGAATATGAGACTATGGAGGCTGCTGAGAAAGCAGTGGCTATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAACTTCTCAAGGGAATGGGGAAGTATGGACACAAAAAACAAGCTTGGAAAGGACATCATTCTGAGAAGAATAGCTCAAGGCCTGAACAAACAGGAGATGAGGAGAATCATGGCTCTAATGATCATCATGAAGATACCCATGAGGAAGAAGATGGGGATCATTTGTCAAAGGATAAGGGTGGGCAGAGGTATAGAAATCAAGGAAGATCAAGAAAACATAAATATCGTGCTGGAAATGGAATGGGCCATGGAAGTGCACCATCAACTCATGCTGCTGAAGCATCAAAGTCACCTCCTGGACCCAGAATGCCAGATGGAACACGTGGCTTCGCAGTTGGACGAGGTCGGCCTCCTGTCCCTGCTTCGAATTAG

>Glyma13g28880.2   sequence type=CDS   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTTCCTTCCTTGTTTGTCAACATGAACTGCATTGCAATCTATACTTCAAGTCCTAAGCAAAAAATTCTCCCATGGGGACTGCAGGTTGTTAGTGGTGATGGGAGAAGGGTCAAGCGGCTCAATCCACTTCGTTTCAATGAATCTAGAGATCATAAGTTATATACTGTTTTGGTAGAGAATTTGCCAGAGGATCATTCAAAGAAGAACATTCAACAAATATTCCATGAAGCTGGAAATATAAAGAGGATAACCATTCATGACCCACATTCTACTTCAGAGTCTGCAAAACAACATAACAAGCAAGAAATGCTAATTAGTAATAAGTTACACGCTCTTGTGGAATATGAGACTATGGAGGCTGCTGAGAAAGCAGTGGCTATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAACTTCTCAAGGGAATGGGGAAGTATGGACACAAAAAACAAGCTTGGAAAGGACATCATTCTGAGAAGAATAGCTCAAGGCCTGAACAAACAGGAGATGAGGAGAATCATGGCTCTAATGATCATCATGAAGATACCCATGAGGAAGAAGATGGGGATCATTTGTCAAAGGATAAGGGTGGGCAGAGGTATAGAAATCAAGGAAGATCAAGAAAACATAAATATCGTGCTGGAAATGGAATGGGCCATGGAAGTGCACCATCAACTCATGCTGCTGAAGCATCAAAGTCACCTCCTGGACCCAGAATGCCAGATGGAACACGTGGCTTCGCAGTTGGACGAGGTCGGCCTCCTGTCCCTGCTTCGAATTAG

>Glyma13g28880.3   sequence type=CDS   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCGGGGAAGAGGTTCTCCCTTCGGCCACTGCCACCTCCGCCGCCACCGGCAATCCCACCGCTTCGCCTCCTCCGCTCGCTGATCTTGTCGGTGCTCCCGATCTCGCTGCTGCCTCGGACGACGTCGTTACCCAACCTGAAATTCACGCGCTGATTTCAGACGAAGAGCACGATCACGAGCATGAACATGACGATGACCTCGAGCACGAGCACGATCAGCATGAGCATGACCACCACCACGAGGACCGCGATGATCACGCCGCTGTGGCCGCTGTCTCCTTGGAAGATCTCAAACTCAAGATCATTAAGCAGGCGGAGTATTATTTCAGCGATGAAAACCTGCCTACTGATAAGTATCTGTTGGGTTTCGTCAAGAGGAACAAGGAAGGGTTTGTTCCTGTATCAGTAATTGCTTCTTTTAGAAAAATAAAGAAGCTCACGCGAGACCATGCATTTATTGTTGCTGCACTGAAGGAGTCTTCACTGCTTGTTGTTAGTGGTGATGGGAGAAGGGTCAAGCGGCTCAATCCACTTCGTTTCAATGAATCTAGAGATCATAAGTTATATACTGTTTTGGTAGAGAATTTGCCAGAGGATCATTCAAAGAAGAACATTCAACAAATATTCCATGAAGCTGGAAATATAAAGAGGATAACCATTCATGACCCACATTCTACTTCAGAGTCTGCAAAACAACATAACAAGCAAGAAATGCTAATTAGTAATAAGTTACACGCTCTTGTGGAATATGAGACTATGGAGGCTGCTGAGAAAGCAGGGAAGTATGGACACAAAAAACAAGCTTGGAAAGGACATCATTCTGAGAAGAATAGCTCAAGGCCTGAACAAACAGGAGATGAGGAGAATCATGGCTCTAATGATCATCATGAAGATACCCATGAGGAAGAAGATGGGGATCATTTGTCAAAGGATAAGGGTGGGCAGAGGTATAGAAATCAAGGAAGATCAAGAAAACATAAATATCGTGCTGGAAATGGAATGGGCCATGGAAGTGCACCATCAACTCATGCTGCTGAAGCATCAAAGTCACCTCCTGGACCCAGAATGCCAGATGGAACACGTGGCTTCGCAGTTGGACGAGGTCGGCCTCCTGTCCCTGCTTCGAATTAG

Predicted protein sequences of Glyma13g28880

Limit To All Plant Sequences

>Glyma13g28880.1   sequence type=predicted peptide   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGEEVLPSATATSAATGNPTASPPPLADLVGAPDLAAASDDVVTQPEIHALISDEEHDHEHEHDDDLEHEHDQHEHDHHHEDRDDHAAVAAVSLEDLKLKIIKQAEYYFSDENLPTDKYLLGFVKRNKEGFVPVSVIASFRKIKKLTRDHAFIVAALKESSLLVVSGDGRRVKRLNPLRFNESRDHKLYTVLVENLPEDHSKKNIQQIFHEAGNIKRITIHDPHSTSESAKQHNKQEMLISNKLHALVEYETMEAAEKAVAMLNNEQDWRNGMRVKLLKGMGKYGHKKQAWKGHHSEKNSSRPEQTGDEENHGSNDHHEDTHEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAGNGMGHGSAPSTHAAEASKSPPGPRMPDGTRGFAVGRGRPPVPASN*

>Glyma13g28880.2   sequence type=predicted peptide   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILPSLFVNMNCIAIYTSSPKQKILPWGLQVVSGDGRRVKRLNPLRFNESRDHKLYTVLVENLPEDHSKKNIQQIFHEAGNIKRITIHDPHSTSESAKQHNKQEMLISNKLHALVEYETMEAAEKAVAMLNNEQDWRNGMRVKLLKGMGKYGHKKQAWKGHHSEKNSSRPEQTGDEENHGSNDHHEDTHEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAGNGMGHGSAPSTHAAEASKSPPGPRMPDGTRGFAVGRGRPPVPASN*

>Glyma13g28880.3   sequence type=predicted peptide   gene model=Glyma13g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGEEVLPSATATSAATGNPTASPPPLADLVGAPDLAAASDDVVTQPEIHALISDEEHDHEHEHDDDLEHEHDQHEHDHHHEDRDDHAAVAAVSLEDLKLKIIKQAEYYFSDENLPTDKYLLGFVKRNKEGFVPVSVIASFRKIKKLTRDHAFIVAALKESSLLVVSGDGRRVKRLNPLRFNESRDHKLYTVLVENLPEDHSKKNIQQIFHEAGNIKRITIHDPHSTSESAKQHNKQEMLISNKLHALVEYETMEAAEKAGKYGHKKQAWKGHHSEKNSSRPEQTGDEENHGSNDHHEDTHEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAGNGMGHGSAPSTHAAEASKSPPGPRMPDGTRGFAVGRGRPPVPASN*

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