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Report for Sequence Feature Glyma13g28871

Feature Type:gene_model
Chromosome:Gm13
Start:31834425
stop:31841600
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g28871
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18270AT Annotation by Michelle Graham. TAIR10: translocase 11 | chr4:10099364-10101897 REVERSE LENGTH=480 SoyBaseE_val: 1.00E-132ISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008963GO-mf Annotation by Michelle Graham. GO Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
PTHR22926Panther PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE JGI ISS
PTHR22926:SF3Panther PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE JGI ISS
PF00953PFAM Glycosyl transferase family 4 JGI ISS
UniRef100_G7IPX9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Medicago truncatula RepID=G7IPX9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233BD0FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BD0F related cluster n=1 Tax=unknown RepID=UPI000233BD0F SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g28871
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g28871 not represented in the dataset
Glyma13g28871 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28871
ParalogEvidenceComments
Glyma15g10171 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28871 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g217500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g28871
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g28871
>Glyma13g28871.2   sequence type=transcript   gene model=Glyma13g28871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTCGAAGTGCCGCCATTTGACAATTTCCCTCTCTGTTTATATAAAACGTTTATTTCCATATCATAACATGGAATATGCTCGCGTCCATTCCATACCATTGCGTTCGAAGTTCATTTCCTGCTTCTCCTCAGATCTACTCCTTCTGCAACTCTCTCTCGCATCGCATTGCATTGCATCCATGCCTTCTCATTCTTGCATCCTCAACCACCACCGCCATCGCTCTCTCCCACTCCCTCTCCCTCTCCATCTCTCTCGCCGCAAACGCCTCTCTCTCCCTCCAACCCCTTCCCTCATCTATTCTCCCAGTTCCCGCTTCGATTGCGCCACTCTCGAGTTACATCCGTCGATTATTCCGCAGAATGAATGCTGCTTTCCACGCAATGTTGCTCCTACGAGAGCCTTCGACGATGATTCGTTTGACATACCAATGCTTGATTATTGGGATGCTGATGATAATTCTTCTGCGTATATGCTCTCTTCTAGTGATGGGGAAGACAGTGATGGTGAAATTTTTCTTACTCCAGTGAATGATCTTGATTTGCCTTCTGTTTCGGCGTCAAATAATGATGCTCTAACAGTGGCTGCTCATCGTTTTGCAAATCTTGGGAGGGGACGCAAGAAATCTAGGACCAAACTTGGTATTTTCATCACTATGGGGCTTATAATCGTCTTGACATTACTGCTTTTGTATGTGGATTGGTGTGCATGGAGAATTGTTAGACTTCCCTTATCACCTTTTTACTTGACCCGCCCATTTCTCATATCAGCCATTTTGGTTTCTTTTGTTGGCTATGTTTGTGTCCCAATTTTTCGTCATTTTAAAATTATCCATGTAATCAAGAAACAAGGACCTGCTAGACATCACATGAAAAAGACAACACCCACATTGGGTGGTTTGCTTTTTATACCTGTTGGTGTAGTTGTTGCTCATGTCTTTGCTGGTTCCTCATCTATAGAAGTGTCTGGGGCAGCTGGAGCAACCATTGGATTTGCTGCAGTTGGTTTACTTAGTGATATATTAAGCCTCACCAAGAATCATTGGAGAGGTTTGCCTGCATTGACAGAAGTTCTATTGGAGGTAGCTGTTGGAACATGGTTTTCATTTTGGTTGGACATCACCAGTATATCTTCACCCTATGGCATGAAGATGCTGGTTCCTCTACCTCTGGGCCTTGTGTACTTGGGACGATGTTACCAACTCTTGACTTCATTTTGTTTTGTTTCCATGGGACATGGTGTTAAATTAGCAGATGCTCTTGATGGACTAGCTGGAGGTATTGCTGCGTTGGCATTTACCGGAATGTCAATAGCTGTTCTTCCAATTTGTTCTGTTCCACATTCAATCTATATGATCAATAAAAGGAATTAAAAAAAGAGTATATAAATTACAACAACAATAACAAAAGCTTACAAGGATCATACAACGTCATTTGGTTTGGTTACAGGTCAAATCTTCAGCTAGGTACCATGAGATCCCTCTCAATGTCTTTCTTTGTCTCCTCTTTTTTACAGTACTAATTTACTAAAAACCAT
Coding sequences of Glyma13g28871
>Glyma13g28871.1   sequence type=CDS   gene model=Glyma13g28871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATATGCTCGCGTCCATTCCATACCATTGCGTTCGAAGTTCATTTCCTGCTTCTCCTCAGATCTACTCCTTCTGCAACTCTCTCTCGCATCGCATTGCATTGCATCCATGCCTTCTCATTCTTGCATCCTCAACCACCACCGCCATCGCTCTCTCCCACTCCCTCTCCCTCTCCATCTCTCTCGCCGCAAACGCCTCTCTCTCCCTCCAACCCCTTCCCTCATCTATTCTCCCAGTTCCCGCTTCGATTGCGCCACTCTCGAGTTACATCCGTCGATTATTCCGCAGAATGAATGCTGCTTTCCACGCAATGTTGCTCCTACGAGAGCCTTCGACGATGATTCGTTTGACATACCAATGCTTGATTATTGGGATGCTGATGATAATTCTTCTGCGTATATGCTCTCTTCTAGTGATGGGGAAGACAGTGATGGTGAAATTTTTCTTACTCCAGTGAATGATCTTGATTTGCCTTCTGTTTCGGCGTCAAATAATGATGCTCTAACAGTGGCTGCTCATCGTTTTGCAAATCTTGGGAGGGGACGCAAGAAATCTAGGACCAAACTTGGTATTTTCATCACTATGGGGCTTATAATCGTCTTGACATTACTGCTTTTGTATGTGGATTGGTGTGCATGGAGAATTGTTAGACTTCCCTTATCACCTTTTTACTTGACCCGCCCATTTCTCATATCAGCCATTTTGGTTTCTTTTGTTGGCTATGTTTGTGTCCCAATTTTTCGTCATTTTAAAATTATCCATGTAATCAAGAAACAAGGACCTGCTAGACATCACATGAAAAAGACAACACCCACATTGGGTGGTTTGCTTTTTATACCTGTTGGTGTAGTTGTTGCTCATGTCTTTGCTGGTTCCTCATCTATAGAAGTGTCTGGGGCAGCTGGAGCAACCATTGGATTTGCTGCAGTTGGTTTACTTAGTGATATATTAAGCCTCACCAAGAATCATTGGAGAGGTTTGCCTGCATTGACAGAAGTTCTATTGGAGGTAGCTGTTGGAACATGGTTTTCATTTTGGTTGGACATCACCAGTATATCTTCACCCTATGGCATGAAGATGCTGGTTCCTCTACCTCTGGGCCTTGTGTACTTGGGACGATGTTACCAACTCTTGACTTCATTTTGTTTTGTTTCCATGGGACATGGTGTTAAATTAGCAGATGCTCTTGATGGACTAGCTGGAGGTATTGCTGCGTTGGCATTTACCGGAATGTCAATAGCTGTTCTTCCAATTTGTTCTGATCTTGCTATATTTGGAGCTTCAATGGCTGGATCTTGTGTTGGATTTCTTCTACACAACAGATACAAAGCGTCTGTATTTATGGGTAATATTGGATCTTTGGCACTTGGCGGTGCATTAGCTGCAATGGCTGCATGTACTGGAATGTTCTTCCCGCTACTCATTTCTTCCGGATTTTTCATTGTTGAGTCATTATCAGTTATCATTCAGGTTGTCTACTTCAAGATTACCAAGGGCTTCCCGAGAGCATGGTGGTGGCGCTTTTTGAGAATCCCTCCCTTCCATTACCGCCTCCAGTTACGTGGGTTCAGAGAACCAAATATTGTATTAGGTGCTTATCTTATATCATCTGTTTTGGCTTTGCTTGGCGGCTATGTGGGTCTTGTTTCAGCATAA

>Glyma13g28871.2   sequence type=CDS   gene model=Glyma13g28871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATATGCTCGCGTCCATTCCATACCATTGCGTTCGAAGTTCATTTCCTGCTTCTCCTCAGATCTACTCCTTCTGCAACTCTCTCTCGCATCGCATTGCATTGCATCCATGCCTTCTCATTCTTGCATCCTCAACCACCACCGCCATCGCTCTCTCCCACTCCCTCTCCCTCTCCATCTCTCTCGCCGCAAACGCCTCTCTCTCCCTCCAACCCCTTCCCTCATCTATTCTCCCAGTTCCCGCTTCGATTGCGCCACTCTCGAGTTACATCCGTCGATTATTCCGCAGAATGAATGCTGCTTTCCACGCAATGTTGCTCCTACGAGAGCCTTCGACGATGATTCGTTTGACATACCAATGCTTGATTATTGGGATGCTGATGATAATTCTTCTGCGTATATGCTCTCTTCTAGTGATGGGGAAGACAGTGATGGTGAAATTTTTCTTACTCCAGTGAATGATCTTGATTTGCCTTCTGTTTCGGCGTCAAATAATGATGCTCTAACAGTGGCTGCTCATCGTTTTGCAAATCTTGGGAGGGGACGCAAGAAATCTAGGACCAAACTTGGTATTTTCATCACTATGGGGCTTATAATCGTCTTGACATTACTGCTTTTGTATGTGGATTGGTGTGCATGGAGAATTGTTAGACTTCCCTTATCACCTTTTTACTTGACCCGCCCATTTCTCATATCAGCCATTTTGGTTTCTTTTGTTGGCTATGTTTGTGTCCCAATTTTTCGTCATTTTAAAATTATCCATGTAATCAAGAAACAAGGACCTGCTAGACATCACATGAAAAAGACAACACCCACATTGGGTGGTTTGCTTTTTATACCTGTTGGTGTAGTTGTTGCTCATGTCTTTGCTGGTTCCTCATCTATAGAAGTGTCTGGGGCAGCTGGAGCAACCATTGGATTTGCTGCAGTTGGTTTACTTAGTGATATATTAAGCCTCACCAAGAATCATTGGAGAGGTTTGCCTGCATTGACAGAAGTTCTATTGGAGGTAGCTGTTGGAACATGGTTTTCATTTTGGTTGGACATCACCAGTATATCTTCACCCTATGGCATGAAGATGCTGGTTCCTCTACCTCTGGGCCTTGTGTACTTGGGACGATGTTACCAACTCTTGACTTCATTTTGTTTTGTTTCCATGGGACATGGTGTTAAATTAGCAGATGCTCTTGATGGACTAGCTGGAGGTATTGCTGCGTTGGCATTTACCGGAATGTCAATAGCTGTTCTTCCAATTTGTTCTGTTCCACATTCAATCTATATGATCAATAAAAGGAATTAA
Predicted protein sequences of Glyma13g28871
>Glyma13g28871.1   sequence type=predicted peptide   gene model=Glyma13g28871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYARVHSIPLRSKFISCFSSDLLLLQLSLASHCIASMPSHSCILNHHRHRSLPLPLPLHLSRRKRLSLPPTPSLIYSPSSRFDCATLELHPSIIPQNECCFPRNVAPTRAFDDDSFDIPMLDYWDADDNSSAYMLSSSDGEDSDGEIFLTPVNDLDLPSVSASNNDALTVAAHRFANLGRGRKKSRTKLGIFITMGLIIVLTLLLLYVDWCAWRIVRLPLSPFYLTRPFLISAILVSFVGYVCVPIFRHFKIIHVIKKQGPARHHMKKTTPTLGGLLFIPVGVVVAHVFAGSSSIEVSGAAGATIGFAAVGLLSDILSLTKNHWRGLPALTEVLLEVAVGTWFSFWLDITSISSPYGMKMLVPLPLGLVYLGRCYQLLTSFCFVSMGHGVKLADALDGLAGGIAALAFTGMSIAVLPICSDLAIFGASMAGSCVGFLLHNRYKASVFMGNIGSLALGGALAAMAACTGMFFPLLISSGFFIVESLSVIIQVVYFKITKGFPRAWWWRFLRIPPFHYRLQLRGFREPNIVLGAYLISSVLALLGGYVGLVSA*

>Glyma13g28871.2   sequence type=predicted peptide   gene model=Glyma13g28871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYARVHSIPLRSKFISCFSSDLLLLQLSLASHCIASMPSHSCILNHHRHRSLPLPLPLHLSRRKRLSLPPTPSLIYSPSSRFDCATLELHPSIIPQNECCFPRNVAPTRAFDDDSFDIPMLDYWDADDNSSAYMLSSSDGEDSDGEIFLTPVNDLDLPSVSASNNDALTVAAHRFANLGRGRKKSRTKLGIFITMGLIIVLTLLLLYVDWCAWRIVRLPLSPFYLTRPFLISAILVSFVGYVCVPIFRHFKIIHVIKKQGPARHHMKKTTPTLGGLLFIPVGVVVAHVFAGSSSIEVSGAAGATIGFAAVGLLSDILSLTKNHWRGLPALTEVLLEVAVGTWFSFWLDITSISSPYGMKMLVPLPLGLVYLGRCYQLLTSFCFVSMGHGVKLADALDGLAGGIAALAFTGMSIAVLPICSVPHSIYMINKRN*






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