Glyma13g28810 - SoyBase

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Report for Sequence Feature Glyma13g28810

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31780254
stop:	31781222
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18560	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:6164859-6165905 REVERSE LENGTH=348	SoyBase	E_val: 8.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010102	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root morphogenesis	SoyBase	N/A	ISS
GO:0010432	GO-bp	Annotation by Michelle Graham. GO Biological Process: bract development	SoyBase	N/A	ISS
GO:0010451	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem growth	SoyBase	N/A	ISS
GO:0010582	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7JK99	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor n=1 Tax=Medicago truncatula RepID=G7JK99_MEDTR	SoyBase	E_val: 3.00E-87	ISS
UniRef100_I1M1D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1D9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28810

Paralog	Evidence	Comments
Glyma15g10245	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g216900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28810

Limit To All Plant Sequences

>Glyma13g28810.2   sequence type=CDS   gene model=Glyma13g28810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCTCAAGAACCTCTGATGCTTCCCTCAAAGGATATGAGTCCAACCAAACCCAAATGAATCTGTCCCTCCTTCAACGTAACATGTCTCCTTCTGGCGAGAGAAGAGGCCGAGGAAAACAAGCAGAACCTGGAAGGTTTCTCGGAGTAAGAAGGCGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCATATATTCCAAAGACACCAATACCAACATTTTCCACAATGCTCTCACTCCTATGAATACTCAACCTCTCTTGCCACCTTCACATAACACTCACAACACACAACCAACCAATCAAAGTGGCCTATCTCACCACCTTGGTGCTATCTCTTCCCACATTGAAAACCCTTCTGACATGAGTGCATATGGGTCACCTCAGGATGATAATTTCTTCTTCTCCAATGATTCTAACTCGGGCTATCTTGAATGCATAGTTCAGGATAACTGCTTCAGGAAGAGCAATGCCAGTGCTTCAAGTCATGACCTTACGATTGGCCACGTTAACTCAAACTCCATGCATGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTGAACATGCAAACAACAGTGACTTCAAACTATGCAGATATTTCTTACCCTAGTCAAGGATTATGGAACAATCAGCAATCATGGGATTGCAGTTCCAATGAACTAGCAGCTATGTTTAAAAATCCATCAAGGGCTGAGGAAGGGTACATGTGCATGAATGCATTAATGTATCCCTTCACTGATAGTTCAAGCTACGGTTTTATGACTCAGGCTGAGGCTGTTTCTTCAACTACCTTTTCTCCATCACTTCCTCCCTTTGGGGATGCTGATTTGGGATACTCACCCTTTTGA

Predicted protein sequences of Glyma13g28810

Limit To All Plant Sequences

>Glyma13g28810.2   sequence type=predicted peptide   gene model=Glyma13g28810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSRTSDASLKGYESNQTQMNLSLLQRNMSPSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAQEAALAYDRAALSMKGCQARTNFIYSKDTNTNIFHNALTPMNTQPLLPPSHNTHNTQPTNQSGLSHHLGAISSHIENPSDMSAYGSPQDDNFFFSNDSNSGYLECIVQDNCFRKSNASASSHDLTIGHVNSNSMHVQPHFDTTQEALNMQTTVTSNYADISYPSQGLWNNQQSWDCSSNELAAMFKNPSRAEEGYMCMNALMYPFTDSSSYGFMTQAEAVSSTTFSPSLPPFGDADLGYSPF*

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