SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g28800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g28800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g28800

Feature Type:gene_model
Chromosome:Gm13
Start:31769617
stop:31774319
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18570AT Annotation by Michelle Graham. TAIR10: GTP1/OBG family protein | chr5:6171839-6174823 REVERSE LENGTH=681 SoyBaseE_val: 0ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG1489 KOG Predicted GTP-binding protein (ODN superfamily) JGI ISS
PTHR11702Panther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED JGI ISS
PTHR11702:SF3Panther GTP-BINDING PROTEIN, GTP1/OBG-FAMILY JGI ISS
PF01018PFAM GTP1/OBG JGI ISS
PF01926PFAM GTPase of unknown function JGI ISS
PF09269PFAM Domain of unknown function (DUF1967) JGI ISS
UniRef100_G7IPZ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTPase obg n=1 Tax=Medicago truncatula RepID=G7IPZ3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M1D8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1D8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g28800 not represented in the dataset

Glyma13g28800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g10260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g216800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g28800.1   sequence type=CDS   gene model=Glyma13g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAGTCCCGGTTTGGCAAGGACAAAGATGGCTGCTGCTACAGCTACTGCTTCTTCAATCTCAGCGTGGTTCACTCCTCACGCTTTCGCTCGTCGCAAAACCCGGAACCCTAAAATTCAGAAACCAGTCCTCCCAGTCCCCGGCGGCGGCGAAGCCACCACCTACACTCGCCTCCCGCTCAAGCACGACTATTCCGCTCCCTCCCCTCTCTCCTCTCCCGAAATCAAGCTCTCCGAAACAGCCCCACCGATCACCCGCCTCCTCCGTAATCGTAAACCACAAAATATAAAACAAGACGACGTCGTGTTCGAATATTCCGATTCCGAACCTGAAAGCGACGGCGAGTATGAAGCCTTCGACTTTTCGGGAGACGAGAATGTGGGCGAAGGCGAGGAAGAGACTCCGAGCGTGAAGGAGAAGGGGGTGCCGGCGGTGATGCGGTGTTTCGACCGGGCGAAGATATACGTGAAGTCGGGGGACGGTGGGAACGGCGTGGTGGCGTTCCGGCGGGAGAAGTACGTGCCGATGGGAGGGCCTTCGGGGGGCGACGGAGGGAGGGGAGGCGACGTGTACGTGGAGGTCGACGGGGCGATGAATTCGCTGCTGCCGTTTCGGAACAGCGTGCATTTCCGGGCAGGGAGGGGAGGCCACGGGCAGGGGAGCATGCAGAGTGGGGCAAAGGGGGAGGATCTGGTGGTGAAGGTGCCACCTGGAACGGTTGTTCGAATGAGTGGCGAGGATAACGTGCTGTTGGAGATGGTGTATCCGGGACAGAAAGGGTTGCTGTTGCCAGGTGGTAGAGGAGGCAGAGGGAATGCTTCATTCAAGTCAGGGACTAATAAGGTCCCCAAGATTGCCGAGAATGGGGAAGAGGGTCCTGAAATGTGGTTGGAGTTAGAACTCAAGCTGGTTGCGGATGTTGGTATAGTTGGTGCTCCGAATGCAGGGAAAAGTACACTTTTGAGTGTTGTTAGTGCTGCAAAGCCGGCTGTTGCTAATTATCCTTTTACAACACTGCTTCCGAATCTCGGTGTTGTTTCCTTTGACTATGATTCAACCATGGTTGTGGCAGACCTTCCGGGTCTACTTGAAGGGGCACATCGAGGTTTTGGTTTAGGCCATGAGTTTCTACGGCACACTGAAAGGTGTTCTGCTCTGGTACATGTTGTTGATGGTTCATCACAGCAGCCAGATCTCGAGTTTGACGCAGTTCGTCTAGAGCTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCTTATGTAGTTGCTTTTAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGGAATCCTTCAAAGAAAAGTTGCAATCTCGTGGGATCACACCATTTTGTATGAGTGCTGTCAAAAGGGAAGGTACTCATGAAGTTATCTGTGCTGCTTATGAGCTTTTGCGTAAAAGTAAAGAAGACAAGGAGGAATATGAAGATGGAAGAGATATGGTAAACTTGAACCATGTCGCTGCTGCAGTAAAGAAGCAGCGGAGTGCATCCATTAGTGATTTTGAGATTTTTCATGACAGCGATTCAAATATTTGGCATGTAGTTGGATCTGGATTGCAACGATTTATACAGATGACGAATTGGCGGTACATTGATTCGGAGAGAAGATTCCAACATGTTCTTGAGGCTTGTGGTGTGTACAAGTCTCTCATGAAACTTGGTGTAAAGGAAGGGGACACGGTAATTGTTGGAGAGATGAAGATGATATGGCATGACTCCTCTGACAATCCTGGTGCATCTAGGATGAAGAAAATATCCACAGATTCATTTAAATGGGCTGAATGGAAGTAA

>Glyma13g28800.1   sequence type=predicted peptide   gene model=Glyma13g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSPGLARTKMAAATATASSISAWFTPHAFARRKTRNPKIQKPVLPVPGGGEATTYTRLPLKHDYSAPSPLSSPEIKLSETAPPITRLLRNRKPQNIKQDDVVFEYSDSEPESDGEYEAFDFSGDENVGEGEEETPSVKEKGVPAVMRCFDRAKIYVKSGDGGNGVVAFRREKYVPMGGPSGGDGGRGGDVYVEVDGAMNSLLPFRNSVHFRAGRGGHGQGSMQSGAKGEDLVVKVPPGTVVRMSGEDNVLLEMVYPGQKGLLLPGGRGGRGNASFKSGTNKVPKIAENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVVSAAKPAVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSSQQPDLEFDAVRLELKLFNPELAEKPYVVAFNKMDLPEAYENWESFKEKLQSRGITPFCMSAVKREGTHEVICAAYELLRKSKEDKEEYEDGRDMVNLNHVAAAVKKQRSASISDFEIFHDSDSNIWHVVGSGLQRFIQMTNWRYIDSERRFQHVLEACGVYKSLMKLGVKEGDTVIVGEMKMIWHDSSDNPGASRMKKISTDSFKWAEWK*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo