Glyma13g28710 - SoyBase

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Report for Sequence Feature Glyma13g28710

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31695311
stop:	31700372
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18640	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:6213283-6215494 FORWARD LENGTH=357	SoyBase	E_val: 2.00E-166	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
KOG4569	KOG	Predicted lipase	JGI		ISS
PTHR21493	Panther	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	JGI		ISS
PTHR21493:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_B7FJ77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=2 Tax=Medicago truncatula RepID=B7FJ77_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M1C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1C9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28710

Paralog	Evidence	Comments
Glyma15g10380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g215800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28710

Limit To All Plant Sequences

>Glyma13g28710.2   sequence type=transcript   gene model=Glyma13g28710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACATGCCCCCAATTTTGGTTGTTGTTGAAGTGATTGATATTTTTCTTTATAATAACAAATTGACTTTTTCTTCCTTTGATTTGTGTACTTCAATTGCAGAGTATATATATATGTATGTATATGGGGAAAACTAGGTGGTTGATAATATTGGTTACCTGTTTATGCCTGCTTTCCTTTTCTGATGGCAGAGAACTCAAGGTTAGGCATAAAAAGCAACATTACCAATACAATCATACAGTTGCTACAATATTAGTGGAATATGCTTCTGCGGTATACTTGTCAGATTTAACTGAACTTTTTACTTGGACGTGCTCTAGGTGTAATGGCTTGACCAAGGGATTTGAAATGATAGAGTTAGTTGTTGACGTCGAGCATTGCTTACAGGCATTTGTTGGAGTGGCCGATGATCCTCATGCCATTATCATTGCATTCAGAGGAACAAATGAACACAGCTTACAGAATTGGATTGAAGATTTATATTGGAAGCAGCATGATATAAATTATCCAGGCATGGATGATGCAATGGTACACCGTGGTTTTTATACCGCGTACCACAATACAACAATACGTCCTGCAATTTTAGATGCTGTTGAAAGAGCAAAGAAGTTTTATGGAGATATTGAAATTATAGCAACAGGGCATTCAATGGGAGGGGCAATGGCTTCATTTTGTGGACTTGATTTAACGGTAAATCAAAATGAAAAAAATGTTCAAGTTATGACATTTGGACAACCTCGTATTGGAAATGCTGCTTTTGCATCTCTCTATACGAAACTAGTTCCAAATACCATCCGAGTCACAAATGACCATGATATTGTACCTCATTTGCCTCCATACTATTATTATTTACCGCAGAAGACATACCGCCACTTCCCAAGAGAGGTATGGCTTTATAACATCGGATTAGGTAGTCTTGTGTACAGTGTTGAGAAGATTTGTGATGAATCTGGTGAGGATCCAAATTGCAGCAGATCGGTGACTGGGAATAGCATTGCTGATCACTTGGTCTATTATGGCGTTGACATGGGATCAGATGAGCCAAGTTCATGCAGAATTGTTATGGATTCTTATGTTCAGAATACTAACATCAAAGATTCAAGAGGAAACTTAATCTTGTCCAGAGATCCTGCAACCCCCCTCATCAAATTGAGTGGAGAGGGTGACAATCAGGAAAATCCCATTAATGTTGATTGAATTGGCATCAGATATCTGTTGCATGATATGTTCCAGAGGTTTGCCGTGTGGCATTATTCTTCAGATTTCTTCTTTCTTCATGGTCCATACAGCTGAACAATTTTATTGAACAGGCTAGGGCTGGAAGGAGTTTGTATAGTCTTGGACTCGTGTACATATGCTCATACTTGTATATATAACTAATAATTATATTTTTTTACTTCATAATTAATAATTCTTGATACTTTGTTAAGTGTATAATTTCACTTTCAAATTCTACTGAATTCCACTTCTCATTTGGGTGATAATTCTTTTACCCATTGCCGTTTCC

Coding sequences of Glyma13g28710

Limit To All Plant Sequences

>Glyma13g28710.1   sequence type=CDS   gene model=Glyma13g28710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATATGGGGAAAACTAGGTGGTTGATAATATTGGTTACCTGTTTATGCCTGCTTTCCTTTTCTGATGGCAGAGAACTCAAGGTTAGGCATAAAAAGCAACATTACCAATACAATCATACAGTTGCTACAATATTAGTGGAATATGCTTCTGCGGTATACTTGTCAGATTTAACTGAACTTTTTACTTGGACGTGCTCTAGGTGTAATGGCTTGACCAAGGGATTTGAAATGATAGAGTTAGTTGTTGACGTCGAGCATTGCTTACAGGCATTTGTTGGAGTGGCCGATGATCCTCATGCCATTATCATTGCATTCAGAGGAACAAATGAACACAGCTTACAGAATTGGATTGAAGATTTATATTGGAAGCAGCATGATATAAATTATCCAGGCATGGATGATGCAATGGTACACCGTGGTTTTTATACCGCGTACCACAATACAACAATACGTCCTGCAATTTTAGATGCTGTTGAAAGAGCAAAGAAGTTTTATGGAGATATTGAAATTATAGCAACAGGGCATTCAATGGGAGGGGCAATGGCTTCATTTTGTGGACTTGATTTAACGGTAAATCAAAATGAAAAAAATGTTCAAGTTATGACATTTGGACAACCTCGTATTGGAAATGCTGCTTTTGCATCTCTCTATACGAAACTAGTTCCAAATACCATCCGAGTCACAAATGACCATGATATTGTACCTCATTTGCCTCCATACTATTATTATTTACCGCAGAAGACATACCGCCACTTCCCAAGAGAGGTATGGCTTTATAACATCGGATTAGGTAGTCTTGTGTACAGTGTTGAGAAGATTTGTGATGAATCTGGTGAGGATCCAAATTGCAGCAGATCGGTGACTGGGAATAGCATTGCTGATCACTTGGTCTATTATGGCGTTGACATGGGATCAGATGAGCCAAGTTCATGCAGAATTGTTATGGATTCTTATGTTCAGAATACTAACATCAAAGATTCAAGAGGAAACTTAATCTTGTCCAGAGATCCTGCAACCCCCCTCATCAAATTGAGTGGAGAGGGTGACAATCAGGAAAATCCCATTAATGTTGATTGA

>Glyma13g28710.2   sequence type=CDS   gene model=Glyma13g28710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATATGGGGAAAACTAGGTGGTTGATAATATTGGTTACCTGTTTATGCCTGCTTTCCTTTTCTGATGGCAGAGAACTCAAGGTTAGGCATAAAAAGCAACATTACCAATACAATCATACAGTTGCTACAATATTAGTGGAATATGCTTCTGCGGTATACTTGTCAGATTTAACTGAACTTTTTACTTGGACGTGCTCTAGGTGTAATGGCTTGACCAAGGGATTTGAAATGATAGAGTTAGTTGTTGACGTCGAGCATTGCTTACAGGCATTTGTTGGAGTGGCCGATGATCCTCATGCCATTATCATTGCATTCAGAGGAACAAATGAACACAGCTTACAGAATTGGATTGAAGATTTATATTGGAAGCAGCATGATATAAATTATCCAGGCATGGATGATGCAATGGTACACCGTGGTTTTTATACCGCGTACCACAATACAACAATACGTCCTGCAATTTTAGATGCTGTTGAAAGAGCAAAGAAGTTTTATGGAGATATTGAAATTATAGCAACAGGGCATTCAATGGGAGGGGCAATGGCTTCATTTTGTGGACTTGATTTAACGGTAAATCAAAATGAAAAAAATGTTCAAGTTATGACATTTGGACAACCTCGTATTGGAAATGCTGCTTTTGCATCTCTCTATACGAAACTAGTTCCAAATACCATCCGAGTCACAAATGACCATGATATTGTACCTCATTTGCCTCCATACTATTATTATTTACCGCAGAAGACATACCGCCACTTCCCAAGAGAGGTATGGCTTTATAACATCGGATTAGGTAGTCTTGTGTACAGTGTTGAGAAGATTTGTGATGAATCTGGTGAGGATCCAAATTGCAGCAGATCGGTGACTGGGAATAGCATTGCTGATCACTTGGTCTATTATGGCGTTGACATGGGATCAGATGAGCCAAGTTCATGCAGAATTGTTATGGATTCTTATGTTCAGAATACTAACATCAAAGATTCAAGAGGAAACTTAATCTTGTCCAGAGATCCTGCAACCCCCCTCATCAAATTGAGTGGAGAGGGTGACAATCAGGAAAATCCCATTAATGTTGATTGA

Predicted protein sequences of Glyma13g28710

Limit To All Plant Sequences

>Glyma13g28710.1   sequence type=predicted peptide   gene model=Glyma13g28710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYMGKTRWLIILVTCLCLLSFSDGRELKVRHKKQHYQYNHTVATILVEYASAVYLSDLTELFTWTCSRCNGLTKGFEMIELVVDVEHCLQAFVGVADDPHAIIIAFRGTNEHSLQNWIEDLYWKQHDINYPGMDDAMVHRGFYTAYHNTTIRPAILDAVERAKKFYGDIEIIATGHSMGGAMASFCGLDLTVNQNEKNVQVMTFGQPRIGNAAFASLYTKLVPNTIRVTNDHDIVPHLPPYYYYLPQKTYRHFPREVWLYNIGLGSLVYSVEKICDESGEDPNCSRSVTGNSIADHLVYYGVDMGSDEPSSCRIVMDSYVQNTNIKDSRGNLILSRDPATPLIKLSGEGDNQENPINVD*

>Glyma13g28710.2   sequence type=predicted peptide   gene model=Glyma13g28710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYMGKTRWLIILVTCLCLLSFSDGRELKVRHKKQHYQYNHTVATILVEYASAVYLSDLTELFTWTCSRCNGLTKGFEMIELVVDVEHCLQAFVGVADDPHAIIIAFRGTNEHSLQNWIEDLYWKQHDINYPGMDDAMVHRGFYTAYHNTTIRPAILDAVERAKKFYGDIEIIATGHSMGGAMASFCGLDLTVNQNEKNVQVMTFGQPRIGNAAFASLYTKLVPNTIRVTNDHDIVPHLPPYYYYLPQKTYRHFPREVWLYNIGLGSLVYSVEKICDESGEDPNCSRSVTGNSIADHLVYYGVDMGSDEPSSCRIVMDSYVQNTNIKDSRGNLILSRDPATPLIKLSGEGDNQENPINVD*

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