Report for Sequence Feature Glyma13g28700
Feature Type: gene_model
Chromosome: Gm13
Start: 31684836
stop: 31689131
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g28700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G18650 AT
Annotation by Michelle Graham. TAIR10: CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:6218260-6220374 FORWARD LENGTH=267
SoyBase E_val: 2.00E-160 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1940
KOG
Zn-finger protein
JGI ISS
PTHR21319 Panther
RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
PF05495 PFAM
CHY zinc finger
JGI ISS
UniRef100_G7ISH8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger and CHY zinc finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ISH8_MEDTR
SoyBase E_val: 2.00E-173 ISS
UniRef100_I1M1C7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1C7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g28700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g28700
Paralog Evidence Comments
Glyma15g10400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g28700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g215600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g28700
Coding sequences of Glyma13g28700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g28700.1 sequence type=CDS gene model=Glyma13g28700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACCGGGAAAAAACAGTTTCATTGTGATGATTGTGGGATTTGTAGACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGA
Predicted protein sequences of Glyma13g28700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g28700.1 sequence type=predicted peptide gene model=Glyma13g28700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGSVLERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELVRQDVQHVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDTGKKQFHCDDCGICRLGGRENYSHCSKCGCCYSNTLRDNHLCVENSMRHHCPICYEYLFDSLKDIAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLSQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
