Report for Sequence Feature Glyma13g28660
Feature Type: gene_model
Chromosome: Gm13
Start: 31658712
stop: 31661176
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g28660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G39080 AT
Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:16309981-16312475 REVERSE LENGTH=351
SoyBase E_val: 1.00E-114 ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
PTHR10366 Panther
NAD DEPENDENT EPIMERASE/DEHYDRATASE
JGI ISS
PTHR10366:SF69 Panther
SUGAR DEHYDRATASE-RELATED
JGI ISS
UniRef100_I1MF67 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MF67_SOYBN
SoyBase E_val: 8.00E-164 ISS
UniRef100_Q67YQ9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MRNA, complete cds, clone: RAFL24-13-K22 n=2 Tax=Arabidopsis thaliana RepID=Q67YQ9_ARATH
SoyBase E_val: 3.00E-111 ISS
Expression Patterns of Glyma13g28660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g28660
Paralog Evidence Comments
Glyma15g10460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g28660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g215300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g28660
Coding sequences of Glyma13g28660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g28660.2 sequence type=CDS gene model=Glyma13g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTACCCATTTGCAGGTATCAGAAGGTGCACCCACTGAAGCATTCGACCCTTCTCCTTCTCTTGCAATTGGAGAATACGACCTCTTAATCGTTGGTCCTGGGATTCTTGGTCGTTTGGTCGCTCACAATTGGCGCCAGGAATATCCTGGCTGCAAAGTTTTTGGACAAACAGCAACCACTAATCATCATCAAGAGTTAACTGAAATTGGTATCAATCCGTCTTTGAAGTGGACCAAAGCCTCCTCCTTCAAATTTCCCTATGTCATTTTCTGTGCTCCCCTTACCAATCCCCGGACTACCTTGGTGATCTTAGGTGCTTTGCTGTTTACATCAAGCTCTGCTCCTTATGATTGTAATGATAATGGATTGTGTCATGAGGATAATCCAGTGGTGCCAATGGGTAGGAGCCCCAGGACTGATGTCCTTCTAAAAGCTGAAAAGATAGTGCTGGAGTTTGGTGATAAAGGTGCACATGCTTATTGGTTAGATAAGGGGATTGTCGAATCTCGTCCTGATCACATCCTGAATCTTATACACTATGAGGATGCGGCTTCCCTCTCTGTTGCAATTTTGAAGAAACAATTTCATGGGCGGATTTTCTTGGGTTGTGATAATCATCCCTTATCCAGGCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCTAGAACATGCCAGGAAGTAGGGTGGCAGCCCAAGTACTCTAGCTTTGCTCATTTCCTTGAGACCATCTGA
Predicted protein sequences of Glyma13g28660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g28660.2 sequence type=predicted peptide gene model=Glyma13g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATHLQVSEGAPTEAFDPSPSLAIGEYDLLIVGPGILGRLVAHNWRQEYPGCKVFGQTATTNHHQELTEIGINPSLKWTKASSFKFPYVIFCAPLTNPRTTLVILGALLFTSSSAPYDCNDNGLCHEDNPVVPMGRSPRTDVLLKAEKIVLEFGDKGAHAYWLDKGIVESRPDHILNLIHYEDAASLSVAILKKQFHGRIFLGCDNHPLSRQEVMDLVYKSGKFSKKFEKFTGTDDPLGKRLNNSRTCQEVGWQPKYSSFAHFLETI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
