Glyma13g28570 - SoyBase

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Report for Sequence Feature Glyma13g28570

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31566310
stop:	31573126
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18700	AT	Annotation by Michelle Graham. TAIR10: Protein kinase family protein with ARM repeat domain \| chr5:6235387-6240733 REVERSE LENGTH=1366	SoyBase	E_val: 0	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0000914	GO-bp	Annotation by Michelle Graham. GO Biological Process: phragmoplast assembly	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010342	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm cellularization	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0597	KOG	Serine-threonine protein kinase FUSED	JGI		ISS
PTHR24360	Panther	MAPKK/MEKK	JGI		ISS
PTHR24360:SF96	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7ISK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7ISK8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M1B4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1B4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28570

Paralog	Evidence	Comments
Glyma15g10550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g214400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28570

Limit To All Plant Sequences

>Glyma13g28570.1   sequence type=CDS   gene model=Glyma13g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCAGTACCACATCTACGAAGCCATCGGTCGCGGCAGATACTCTACCGTTTACAAAGGCAGGAAGAAGAAGACAATCGAGTATTTCGCCATCAAAAGCGTCGATAAATCACAGAAAACCAAGGTCCTTGAAGAAGTCAGGATTCTTCACACATTGGGCCATGTAAATGTGCTGAAATTTTACGATTGGTATGAAACTTCTGCTCACCTATGGTTGGTTTTGGAGTACTGTGTTGGAGGGGATCTGCTTTCCATATTACGACAGGATAGTCAACTTCCTGAAGACTCGGTTTATGATTTTGCTTATGATATAGTCAAAGCTTTGCAGTTTTTACATTCAAATGGAATAATCTATTGTGACCTGAAACCATCCAATATCCTACTAGATGAAAATGGATGTGCAAAGCTATGTGATTTTGGATTGGCTAGGAAGTTGAAAGATATATCAAAAGCTCCTTCTTCCTCGTTACCGCGAGCAAAACGTGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAGGACAGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCACTAGGCTGTGTACTATATGAATGCTATGCTGGGAGGCCACCCTTTGTGGGAAGAGAATTCACCCAGCTTGTAAAATCCATCATTTCGGATCCGACTCCACCTCTCCCTGGTAATCCAAGTCGGCCTTTTGTCAATTTAATTAATTCCCTGTTGGTAAAAGATCCAGCTGAAAGAATACAGTGGCCTGAGCTTTGTGGACATGCCTTTTGGAGAACCAAATTTACTCTGGTGTCTCTGCCTGCTCAACCTGCATTTGATGATATGATAGGGCTACATGCTAAACCATGCTTATCAGAACGTAATGGAGATAAATCTTCCCATAACAGGACCCCTACCAAATATCGTGAAAAAGATGTCAAAGGGTTTTTGAGAAAGGATGAGAACTCTGTTTTAGGATCTAGAGGCATTGAGACACCAACAAGGGCAACACCAATTGGCCACAGAACTCAGACAAAGGGTTCTGGCAGAATACATGAGGTAAAGCAAAAAGATAATTCCAATATTAGCAAGGGTGTGAATCTTTTGAGACTGTCAAGAATAGCAAAAACAAATCTACAGAGAGAAAATGAGAAGGAAAACTATCGACGCCCCTTGCCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATGCTGAAGATGATGCGCATGAAGAAACTGATGGTGCCGAACAGACAACTCCTGTGCCTGATGAGAAAATGGTCAATCATTTTCTGAACCAGGGAAAAGCAGAGGAGGTTGAAAATAATACACACCAGTTGGACACCCCATCTGTTCACCCTCCAGTCTCAGATGATCCAAGGTCATTTGATCATGAATCAACTCCTGACCATCCTGACATATCTGCTATTTCTCCCAGTGTGAGCCCTCAGGTGAAGAAACATAGAACTAAAGAAGACTCAGGATCTGGCCTTGACTCTGATTCTTCGAGGTTGTCTAACAACCTTTCCCAGGTTCTTTGGCATGCATCTGATCTCTCAGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTCAGAAGTCATTCCTTCACTCCCTTTTGAGGCATTGCAAGCATCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTCCACAACCGAATATTATCCATTTTGAATGGAAATACCAGCATTGGAGAGAAACAGAATGTGATTAGGTACCTTGAGATGTTGAGCAGTAATGCTGATGCAGCTAATATCTTGACCAATGGGCCAATAATGCTCATGCTTGTAAAATTGCAGCGTCAATCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCACTGATCGGTTTGTTGATTAGGCACTCCACCTTTGTTGATGACAGTTTGGCTAGTTCTGGAATTTTAGGTGCACTGACTGATGGCCTTAGAGACAGACAGGAAAAAGTAAGGAGGTTCTCCATGGCTGCTTTGGGTGAGTTACTATTTTATATATCCACTCAAAATGCAGACTGCAGGGATAACAATCAACTTGAATCTCCATCAAAGGACAATAGGAATGCGCATGGCTGGCAGGTTCCAAATTCATTAATATCACTTGTGTCATCAATATTGCGGAAGGGAGAGGATGATATAACTCAATTATATGCATTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGTTCATGGGTGGGGCGTTTGTCCAGTCAAGATGTAATTAGTAATCTCTGCTATATCTATAGGGCCTCAGGGAAACAAGAGAGTATGAGACTCACTGCAGGATCATGCTTGGTGCGCTTAGTTCGTTTTAATCCTCCTAGCATTCAGTCGGTGATAGAGAAACTCTCATTCAAGGACCTATCTTCTGCTCTTGTCAAGGGCAGTCCACGAGAGCAACAAATCAGCTTAAATCTTCTTAACATGGCAATGCTTGGAAGCCACATGTTCACAAATATTGGAAGATACCTTGTTTCACTTGCTGAGGATAAAAATCTGATCCCAAGTCTTTTGGGTCTTGTTGAGCAAGGTAGTGAAGTTTTAAGAGGAAAGGCACTAGTCCTTGTGGCTCTCCTCTGTAAGCATGGCAGGAGGTGGCTTCCACACTTCTTTTGTAGCCAAAAGTTACTCTCTGTAGTGGATAGGCTGGGAAAAGAGAAGGATGCTTATGTGAGGCAGTGTTTGGATGCATTTGTGCATATTGTGGCATCCAGTATTCCAGGTTTACTTGATATAATAACAGGGGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTGCCCTTACCAGCAGATCTGCCCCAAAACCCAACATTCATTTGTTTCCTGTTGTCCTTCATCTTCTTGGAACTTCAACTTTTAAGCACAAAGTAGTTACACCACAAGTCTTACGGCAGTTGGCGAATCTAATTAAACTCGTGGAGACATCGTTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTCGAGTCTCTCACAGAGGAATCTCCTGTGATTATTGGCAATCCTGACATTTTCATACGTGAAATCCTCCCTAGTCTGACAGTTCTGTACAAGGGTAACAAGGACGGTGATGCCAGATTTTTGTGCCTTAAAATTCTTTTTGATGTGATGATCATTCTTTTGAGTGAACCAATTGAAGAAGAGCAAAGATTGACGGATCTGAAATTCGTATCCAATACCCGTTTTCTTCCTCTCTACCCAACCTTGATTGAAGATGAAGATCCTATTCCTATCTATGCGCAGAAGCTTCTTGTCATGCTAATGGAGTTCAGTTTTATTACAATTCCAGACATTCTACATCTGAAGACAATTTCACAATGCTTCGAGTTCTTGCTTGGCGATCTCTCAAATGCAAATGTGAACAATGTTAAGCTGTGTCTTGCTCTGGCTTCTGCTCCTGAGATGGAGTCCAAATTACTCTCTCAGTTAAAGGTGGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTATATGCAAAGGGTATGGAAGATTTGCTGGAACCAACTCTTGGGTTGTGTAAGGCTTTTCTAGCACGTTCAGTTAGCTGCACAAAAGGCTTCAGCTACACAACAGAACTAATTCTCTTAGGTGACTGTCCTCCCGAGTTGAGTGGTGGCGCTGTCGATCCCCAACAATGCATAAAAGATATAGCGGACTTTGGAAGCAATGTCGGTGTCTTGCTAGAGTTGAGTGCCTCTGCAGAAACCAGTATTGCTGATATAGCTTCTGAATGTGTTGTCTTACTGCTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTATACTAACCAATCTCCCCAAGGTGACTGTGATCCTAGAGAGCTGGAGTAGAGGCATTCCTCACTTGATCATCCAGCGAATGCTTCACGCTTTAGGCTATGCTTGCAAGCAATACTTACTGCATGCAATGATATTATCAATATCCAAACCTGAGATTTCAAGAACTGAAGTCATAGTTTCTGAACTCAAAAATTCAGGTGTACCAGCTTTAGCCAAAACAGCTGGGCTGGCAGCCTTGGAATTGCAGCGGTTGCCTCGTTGCATTTGA

Predicted protein sequences of Glyma13g28570

Limit To All Plant Sequences

>Glyma13g28570.1   sequence type=predicted peptide   gene model=Glyma13g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLEEVRILHTLGHVNVLKFYDWYETSAHLWLVLEYCVGGDLLSILRQDSQLPEDSVYDFAYDIVKALQFLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKDISKAPSSSLPRAKRGTPSYMAPELFEDSGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKFTLVSLPAQPAFDDMIGLHAKPCLSERNGDKSSHNRTPTKYREKDVKGFLRKDENSVLGSRGIETPTRATPIGHRTQTKGSGRIHEVKQKDNSNISKGVNLLRLSRIAKTNLQRENEKENYRRPLPNNSENDSEVKIENTDMELDFNENAEDDAHEETDGAEQTTPVPDEKMVNHFLNQGKAEEVENNTHQLDTPSVHPPVSDDPRSFDHESTPDHPDISAISPSVSPQVKKHRTKEDSGSGLDSDSSRLSNNLSQVLWHASDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKMPKEQLEAVHNRILSILNGNTSIGEKQNVIRYLEMLSSNADAANILTNGPIMLMLVKLQRQSKASALRVQLASLIGLLIRHSTFVDDSLASSGILGALTDGLRDRQEKVRRFSMAALGELLFYISTQNADCRDNNQLESPSKDNRNAHGWQVPNSLISLVSSILRKGEDDITQLYALRTIENICSQGGSWVGRLSSQDVISNLCYIYRASGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLSSALVKGSPREQQISLNLLNMAMLGSHMFTNIGRYLVSLAEDKNLIPSLLGLVEQGSEVLRGKALVLVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVHIVASSIPGLLDIITGDIQQMMGGRRHGHISALTSRSAPKPNIHLFPVVLHLLGTSTFKHKVVTPQVLRQLANLIKLVETSFQGRDDFQITLLRIFESLTEESPVIIGNPDIFIREILPSLTVLYKGNKDGDARFLCLKILFDVMIILLSEPIEEEQRLTDLKFVSNTRFLPLYPTLIEDEDPIPIYAQKLLVMLMEFSFITIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSQLKVVRRIGNFLEFVYAKGMEDLLEPTLGLCKAFLARSVSCTKGFSYTTELILLGDCPPELSGGAVDPQQCIKDIADFGSNVGVLLELSASAETSIADIASECVVLLLKAAPREATTGILTNLPKVTVILESWSRGIPHLIIQRMLHALGYACKQYLLHAMILSISKPEISRTEVIVSELKNSGVPALAKTAGLAALELQRLPRCI*

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