Glyma13g28520 - SoyBase

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Report for Sequence Feature Glyma13g28520

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31530652
stop:	31534353
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21480	AT	Annotation by Michelle Graham. TAIR10: BRCT domain-containing DNA repair protein \| chr3:7567730-7571990 FORWARD LENGTH=1041	SoyBase	E_val: 9.00E-107	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23196	Panther	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN	JGI		ISS
UniRef100_G7ISL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of DNA damage checkpoint protein n=1 Tax=Medicago truncatula RepID=G7ISL3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M1A8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1A8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g28520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g213900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28520

Limit To All Plant Sequences

>Glyma13g28520.2   sequence type=CDS   gene model=Glyma13g28520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTACGAGTTAACAATCATGTTGCTAATGATGCCACTCATGTTACTAGAAGTAGTTTAACGTATAAAGTTAATAACTCTTCTACTGGAAAAGTGGGGTCGGGTTCGTCAAAGGAACGTTTGGAACAATATGACAAGAAAAGGAAAGTTGATGTTAAATCAGAGTTACAAACTTCAGGTTTATCAAAGAAAAGTACTAAAGAAGTCAGGCAGTGGACAAAGGACAATATGATGACAAGATCAAAGAGGAGCAAGTTAAATGCAGAAGGCAACCAAACCTCCAGTGCTAATGAAAATGGTAGAGTATCCTTGTCTCCACTAATTGCACAAAGAAAGTCAGCTGGAGCTTTGAAAAGACATCAGCTTGATGAGTTGAATAATCCTGGTGGCAATAATGGAGAAGGTAGAGGGAGTTCAGTCGGCAAAAGGCATTTGCAGGATGATGTTTTGCTTTTTACACCAATTGCCCGCAGAACTAGACGGTCCTTAGCAGTAAACCCATTGATTAATGTCAGTGATGATGCTGAAATGGATACATTAGATTGTCCTAAAGGAAGGAGATCTCTTAGGATTAGGAAGCTGTCTAATGATGACAAACGATCCGAGACATTAGTTGGTTCATCTAAACCATCTGCACAACCTGAAGATATTGGGAAACATACTGCTGGGAAGAGAAAAATGAGAACGGATTCTGTTGTCAAATCACATGTGAATTGCCAAGCTCGGTCATCTTTATCTTTGTATGATGGTTCAGCGATATCTTCTGTTGATCGAAAACAAGGTAAAATATCAGAGCTAAATTCAGATAAAGCAAACCCAGGGGACAATATCAATAATTCTGAAGTCACCACTTTAGATGAATCACCAAGAGAGAGGTATAAGTCATCTGACTTGGCATCTGCAACTCCGGCAAAGTGTAAGACACCCGCGAATGATGCATCACCTGTTTGTATGGGTGATGAATATTACAAACAATCATGCAATAGAAATCTTTCAAGATCATGTAAGGAGCTCCATAGAGAACTTCAAAGCTTGAGGGACATCAGATCTGAATTACTTACTCCGTCTAAAGATTCAAGAAAGAGGAGGGACATGACTGATGTTCGAATTCTTTACAGCCACCACTTGGATGAAGATATTGTTAAGCATCAGAAGAAGATTTTAGCACGGCTTGGAGTTTCTGTGGCTTCCTCCATTGCAGATGCAACCCATTTCATAGCTAATCAATTTGTGCGTACAAGGAATATGTTAGAAGCTATTGCTTTTGGTAAACCGGTGGTCACACACTTATGGATTGAAAGCTGTGGTCAAGCTAGCTGTTTTATTGATGAGAGAAATTACATATTGAGGGATGTGAAAAAGGAAAAGGAGTTAGGTTTCAGCATGCCAGTTTCACTAGCACATGCAATCCAGCATCCTCTTTTAAAGGGTCGAAGAGTATTGGTCACCACAAATACTAAACCCAGTAAAGAGATTGTTTCAAATTTAACGAGAGCTGTTCAGGGCCAGGTAGTGGAGAAAGTAGGAAGATCTGTTTTCAAGGGAGATACAATTTCCGATGATCTACTGATCTTATCTTGTGAAGAAGATTATGCCTCTTGTGTGCCTTTTCTTGAAAAGGGGGCAATGGTGTACAGTTCAGAACTGTTGCTGAATGGCATCGTTACTCAGAAGCTGGAGTATCAGAGGCATCGACTTTTTGCAGACATTGTGAAGAAAACTCGTTCCACCTTATGGTTGAAAAGAGATGACAGAACATTTATTCCTGTGACTAAATGTAATTAG

Predicted protein sequences of Glyma13g28520

Limit To All Plant Sequences

>Glyma13g28520.2   sequence type=predicted peptide   gene model=Glyma13g28520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLRVNNHVANDATHVTRSSLTYKVNNSSTGKVGSGSSKERLEQYDKKRKVDVKSELQTSGLSKKSTKEVRQWTKDNMMTRSKRSKLNAEGNQTSSANENGRVSLSPLIAQRKSAGALKRHQLDELNNPGGNNGEGRGSSVGKRHLQDDVLLFTPIARRTRRSLAVNPLINVSDDAEMDTLDCPKGRRSLRIRKLSNDDKRSETLVGSSKPSAQPEDIGKHTAGKRKMRTDSVVKSHVNCQARSSLSLYDGSAISSVDRKQGKISELNSDKANPGDNINNSEVTTLDESPRERYKSSDLASATPAKCKTPANDASPVCMGDEYYKQSCNRNLSRSCKELHRELQSLRDIRSELLTPSKDSRKRRDMTDVRILYSHHLDEDIVKHQKKILARLGVSVASSIADATHFIANQFVRTRNMLEAIAFGKPVVTHLWIESCGQASCFIDERNYILRDVKKEKELGFSMPVSLAHAIQHPLLKGRRVLVTTNTKPSKEIVSNLTRAVQGQVVEKVGRSVFKGDTISDDLLILSCEEDYASCVPFLEKGAMVYSSELLLNGIVTQKLEYQRHRLFADIVKKTRSTLWLKRDDRTFIPVTKCN*

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