Glyma13g28510 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g28510

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31523204
stop:	31527581
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35810	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr5:13993428-13994549 REVERSE LENGTH=347	SoyBase	E_val: 2.00E-48	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7IFK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A n=1 Tax=Medicago truncatula RepID=G7IFK1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C5FC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C5FC related cluster n=1 Tax=unknown RepID=UPI000233C5FC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28510

Paralog	Evidence	Comments
Glyma15g10581	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g213800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28510

Limit To All Plant Sequences

>Glyma13g28510.3   sequence type=transcript   gene model=Glyma13g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGAAGAACAAGCAAAGAAATTGGAAAAGAAACGCTACCTGTTCCCTCCCAATTGGGGAGCAACGATCCGATTCCTAACCCATATGATGAAGATCTTGCTAATCATTTGCGGTTTTGGAGCATCTTGGATAGGGAAAATCCAACGAAAGAAGGTGAAACACATTCTAGCCAAGCAAGTGATGAATGAACTAATTCAGCGAACTTGTTCTTCTTCCCTGTACAAGCATGACCACACTGGAACAAGTAACATAAATAGTAGTACTAGTAGTAATAATCAAAGTAAGGAGAAAGGAGGTTTTCAGAAAATAAGAAGAACAGATTCACCTATTTTGATTGCAGCAAAGATGGGAGTGGCAGAGATGGTTGAGAAGATTCTTGAGACAGACCCAGTGGCAATCCATGACGTGGACGCTGATAACAAGAATGTTGTTCTTCTGGCCATAGAGAACAGGCAACCTCATGTTTACAGCTTGTTGAATGAGAGGAGCATGATTAAAGAGACTGCATTTCGTCAAGTGGATAACCAAGGGAACAGTGCTTTGCATCTTGCTGCCACCTATAGGAGTTATAAGCCATGGCGTGTCCCTGGTGCTGCATTGCAAATGCAGTGGGAATACAAGTGGTATAAGCTAGTTAAGAACTCCATGCCACCAAATTTCTATGAACGTTACAACGAGAACGGGCAAACAGCGAAGCAGGTATTCATAAGTACACACGAGAGACTCACAAAGGAAGGTGGTAAATGGCTGTCCAAAACCTCAGAATCATGCTCGTTGGTAGCAGCACTTGTTGCAACCGTTGCATTCACAACCTCAACAGCTGTACCAGGCGGTCCGAATCAAAACACAGGTTATCCATTGTTTCAAGGAAGACTGGCTTTCAACATCTTCGCCGTAGCATCACTTGTTGCACTTTGTTCCTCTGTCACTGCCCTTGTTTTGTTCCTCTCAATACTCACATCTCGGTTCCAAGAAAAGGATTTCGCTATGGACTTGCCGAGAAAGCTTCTTCTGGGATTGACCACACTCTTCACATCTATAGCATCTGTCTTGGTCTCATTCTGTGCAGGACATTTCTTCATCGTTGAAGACGAGCTGAAGTTTGCAGTTTATCCCATATATGTTGCTACGTGTTTGCCTGTGTCATTTTTTGCATTTGTTCAACTTCCTCTCTACTTTGATCTGTCCTTGGCTATGATAAGGAAGGTTCCTCAGCGCAGCTATAAATCACATCATCATTAGCTCAAGTTGTTGTCTATGACACCATCTACCCCTCACATATATTCTAACAAAGGAATAAAATTTCAAATATTAATTAAAAGTATTTTTTTTTTTACATTTTTAAATACAA

Coding sequences of Glyma13g28510

Limit To All Plant Sequences

>Glyma13g28510.2   sequence type=CDS   gene model=Glyma13g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGATGGACGTTGAAAGTTTGTTTAACTATGCGGTGAAGGGGCAGTGGAGAGAGGCATTAGATGCCTACAACAAAAACCCGGGAGCATTGGAAGCTAAGATCACAAAAGTGGAAGACACAGTGCTACACGTTGCTGTGCATGTAGGCCAAACTTGCTTTGTGAAGAGTGTGTTAGATAACATCGACAAAGAGGTGTCTCTCAACATCTTATGCATGCAAAACTCAAAGGGTAACACTCCCTTGCACCTTTCAGCACAGCTCGGGAACGTGGAATTGTGCCACAACATGGCCCAAAGGGACCCCAAACTCGTTTGTTTTCGCAACGTTGAAGGTGAGACCCCTCTTTTCTTGGCAGCTGTTCATGGCAAGAGAGAGGCTTTCTTTTGTCTCCATGAAAACCAACAAAGAAGACGTGATGATGAGGAGGATGGCTCGTTGTTGGTTAGGAAAAGCAACGGGGATACCATTCTTCATTCTACCATCGCTAGTGAATACTTTGGTTTGGCGCTTCAAATAATAGAGTTGTACCCAAACCTTGTGAATTCTGTAAACCAGGACGGGTTATCACCTCTGCAGATTCTTGCAGCGAAGCCTAATTGTTTCAAAAGCAGCACGCGGATGGAGTTACTTCAGAGTATTATTTACAAGTGTTCGATTGTTGATGAGATTGAGGAAACATATGATATACGTTGTAATGAAGCAGACACAACTCATCACTACCCTATGAACTATGAAACATGCGCCACCTTCTTATCATTGTTGAAGAGTACTTCAATTGGAAAAGATGACAACGCTGCAAGCAATGATGAAGAGAATAATGTCTCCCGAAAATCTGAGGAAGAACAAGCAAAGAAATTGGAAAAGAAACGCTACCTGTTCCCTCCCAATTGGGGAGCAACGATCCGATTCCTAACCCATATGATGAAGATCTTGCTAATCATTTGCGGTTTTGGAGCATCTTGGATAGGGAAAATCCAACGAAAGAAGGTGAAACACATTCTAGCCAAGCAAGTGATGAATGAACTAATTCAGCGAACTTGTTCTTCTTCCCTGTACAAGCATGACCACACTGGAACAAGTAACATAAATAGTAGTACTAGTAGTAATAATCAAAGTAAGGAGAAAGGAGGTTTTCAGAAAATAAGAAGAACAGATTCACCTATTTTGATTGCAGCAAAGATGGGAGTGGCAGAGATGGTTGAGAAGATTCTTGAGACAGACCCAGTGGCAATCCATGACGTGGACGCTGATAACAAGAATGTTGTTCTTCTGGCCATAGAGAACAGGCAACCTCATGTTTACAGCTTGTTGAATGAGAGGAGCATGATTAAAGAGACTGCATTTCGTCAAGTGGATAACCAAGGGAACAGTGCTTTGCATCTTGCTGCCACCTATAGGAGTTATAAGCCATGGCGTGTCCCTGGTGCTGCATTGCAAATGCAGTGGGAATACAAGTGGTATAAGCTAGTTAAGAACTCCATGCCACCAAATTTCTATGAACGTTACAACGAGAACGGGCAAACAGCGAAGCAGGTATTCATAAGTACACACGAGAGACTCACAAAGGAAGGTGGTAAATGGCTGTCCAAAACCTCAGAATCATGCTCGTTGGTAGCAGCACTTGTTGCAACCGTTGCATTCACAACCTCAACAGCTGTACCAGGCGGTCCGAATCAAAACACAGGTTATCCATTGTTTCAAGGAAGACTGGCTTTCAACATCTTCGCCGTAGCATCACTTGTTGCACTTTGTTCCTCTGTCACTGCCCTTGTTTTGTTCCTCTCAATACTCACATCTCGGTTCCAAGAAAAGGATTTCGCTATGGACTTGCCGAGAAAGCTTCTTCTGGGATTGACCACACTCTTCACATCTATAGCATCTGTCTTGGTCTCATTCTGTGCAGGACATTTCTTCATCGTTGAAGACGAGCTGAAGTTTGCAGTTTATCCCATATATGTTGCTACGTGTTTGCCTGTGTCATTTTTTGCATTTGTTCAACTTCCTCTCTACTTTGATCTGTCCTTGGCTATGATAAGGAAGGTTCCTCAGCGCAGCTATAAATCACATCATCATTAG

>Glyma13g28510.3   sequence type=CDS   gene model=Glyma13g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGATCTTGCTAATCATTTGCGGTTTTGGAGCATCTTGGATAGGGAAAATCCAACGAAAGAAGGTGAAACACATTCTAGCCAAGCAAGTGATGAATGAACTAATTCAGCGAACTTGTTCTTCTTCCCTGTACAAGCATGACCACACTGGAACAAGTAACATAAATAGTAGTACTAGTAGTAATAATCAAAGTAAGGAGAAAGGAGGTTTTCAGAAAATAAGAAGAACAGATTCACCTATTTTGATTGCAGCAAAGATGGGAGTGGCAGAGATGGTTGAGAAGATTCTTGAGACAGACCCAGTGGCAATCCATGACGTGGACGCTGATAACAAGAATGTTGTTCTTCTGGCCATAGAGAACAGGCAACCTCATGTTTACAGCTTGTTGAATGAGAGGAGCATGATTAAAGAGACTGCATTTCGTCAAGTGGATAACCAAGGGAACAGTGCTTTGCATCTTGCTGCCACCTATAGGAGTTATAAGCCATGGCGTGTCCCTGGTGCTGCATTGCAAATGCAGTGGGAATACAAGTGGTATAAGCTAGTTAAGAACTCCATGCCACCAAATTTCTATGAACGTTACAACGAGAACGGGCAAACAGCGAAGCAGGTATTCATAAGTACACACGAGAGACTCACAAAGGAAGGTGGTAAATGGCTGTCCAAAACCTCAGAATCATGCTCGTTGGTAGCAGCACTTGTTGCAACCGTTGCATTCACAACCTCAACAGCTGTACCAGGCGGTCCGAATCAAAACACAGGTTATCCATTGTTTCAAGGAAGACTGGCTTTCAACATCTTCGCCGTAGCATCACTTGTTGCACTTTGTTCCTCTGTCACTGCCCTTGTTTTGTTCCTCTCAATACTCACATCTCGGTTCCAAGAAAAGGATTTCGCTATGGACTTGCCGAGAAAGCTTCTTCTGGGATTGACCACACTCTTCACATCTATAGCATCTGTCTTGGTCTCATTCTGTGCAGGACATTTCTTCATCGTTGAAGACGAGCTGAAGTTTGCAGTTTATCCCATATATGTTGCTACGTGTTTGCCTGTGTCATTTTTTGCATTTGTTCAACTTCCTCTCTACTTTGATCTGTCCTTGGCTATGATAAGGAAGGTTCCTCAGCGCAGCTATAAATCACATCATCATTAG

Predicted protein sequences of Glyma13g28510

Limit To All Plant Sequences

>Glyma13g28510.2   sequence type=predicted peptide   gene model=Glyma13g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEMDVESLFNYAVKGQWREALDAYNKNPGALEAKITKVEDTVLHVAVHVGQTCFVKSVLDNIDKEVSLNILCMQNSKGNTPLHLSAQLGNVELCHNMAQRDPKLVCFRNVEGETPLFLAAVHGKREAFFCLHENQQRRRDDEEDGSLLVRKSNGDTILHSTIASEYFGLALQIIELYPNLVNSVNQDGLSPLQILAAKPNCFKSSTRMELLQSIIYKCSIVDEIEETYDIRCNEADTTHHYPMNYETCATFLSLLKSTSIGKDDNAASNDEENNVSRKSEEEQAKKLEKKRYLFPPNWGATIRFLTHMMKILLIICGFGASWIGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTGTSNINSSTSSNNQSKEKGGFQKIRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIENRQPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRVPGAALQMQWEYKWYKLVKNSMPPNFYERYNENGQTAKQVFISTHERLTKEGGKWLSKTSESCSLVAALVATVAFTTSTAVPGGPNQNTGYPLFQGRLAFNIFAVASLVALCSSVTALVLFLSILTSRFQEKDFAMDLPRKLLLGLTTLFTSIASVLVSFCAGHFFIVEDELKFAVYPIYVATCLPVSFFAFVQLPLYFDLSLAMIRKVPQRSYKSHHH*

>Glyma13g28510.3   sequence type=predicted peptide   gene model=Glyma13g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKILLIICGFGASWIGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTGTSNINSSTSSNNQSKEKGGFQKIRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIENRQPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRVPGAALQMQWEYKWYKLVKNSMPPNFYERYNENGQTAKQVFISTHERLTKEGGKWLSKTSESCSLVAALVATVAFTTSTAVPGGPNQNTGYPLFQGRLAFNIFAVASLVALCSSVTALVLFLSILTSRFQEKDFAMDLPRKLLLGLTTLFTSIASVLVSFCAGHFFIVEDELKFAVYPIYVATCLPVSFFAFVQLPLYFDLSLAMIRKVPQRSYKSHHH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain