Report for Sequence Feature Glyma13g28480
Feature Type: gene_model
Chromosome: Gm13
Start: 31515848
stop: 31519390
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g28480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G18760 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:6258508-6260828 REVERSE LENGTH=411
SoyBase E_val: 1.00E-66 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR23012 Panther
MEMBRANE ASSOCIATED RING FINGER
JGI ISS
PTHR23012:SF39 Panther
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7IFK2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase MARCH1 n=1 Tax=Medicago truncatula RepID=G7IFK2_MEDTR
SoyBase E_val: 2.00E-149 ISS
UniRef100_UPI000233C5FB UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C5FB related cluster n=1 Tax=unknown RepID=UPI000233C5FB
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g28480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g28480
Paralog Evidence Comments
Glyma15g10590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g28480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g213600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g28480
Coding sequences of Glyma13g28480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g28480.2 sequence type=CDS gene model=Glyma13g28480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAAGCGCCACAAGCATCATCACTCACTGATGAAGAAGCTCCTGAAATTTCCCATCAGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGACGGTGGACCAGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTACAGGGTTTGGCAGCACTAGTGGTGTAAGGGTTCTGGATCATTCTCAAAGTTTCGGTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGTTCCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACAGTCCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACGCCCATTTCTGCAAGGGCATATAATGAACAGACTAAGCCTCATAAAGATGTTGATTGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCCGGGCGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGCGAACAGGAGCAACAAGAGTCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTATGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAGTTAAATGGTTTAGCACAAAAGGAGATAAGAAATGTGATGTATGTAGGCTAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACTAGCTCTGTTCAAAGAGAAAACAGACAGCTGCAAGGTCAGCAGAACCTACATCCAGAGTCAATAAGCCTACCTTGTGTAGTGGGATAA
Predicted protein sequences of Glyma13g28480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g28480.2 sequence type=predicted peptide gene model=Glyma13g28480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQAPQASSLTDEEAPEISHQAVPQRNKEVSDGGPGGRRPDISLQVPPRPTGFGSTSGVRVLDHSQSFGKGISSSRGFLRALSFKRKGNVADGERSSLLNSDPKTAADSPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARAYNEQTKPHKDVDCSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQESNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLVKWFSTKGDKKCDVCRLEVQNLPVTLLRVTSSVQRENRQLQGQQNLHPESISLPCVVG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
