Glyma13g28460 - SoyBase

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Report for Sequence Feature Glyma13g28460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31478257
stop:	31485439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18830	AT	Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 7 \| chr5:6276116-6280362 FORWARD LENGTH=818	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0009888	GO-bp	Annotation by Michelle Graham. GO Biological Process: tissue development	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0010638	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0055070	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion homeostasis	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03110	PFAM	SBP domain	JGI		ISS
UniRef100_G7IFL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SQUAMOSA promoter binding protein n=1 Tax=Medicago truncatula RepID=G7IFL1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MF88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF88_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g28460 not represented in the dataset	Glyma13g28460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28460

Paralog	Evidence	Comments
Glyma15g10620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g213400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28460

Limit To All Plant Sequences

>Glyma13g28460.4   sequence type=transcript   gene model=Glyma13g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCAAATGTCGCCACGATGACCCCATCAGCGATCACGTTCAGTTGTTGCTGAATACGAGAAAGAGAAAGAGATCTAAACAACGCCGTTTCTTCCATTCTCCGCCAAACATCCAACAACCCCTAACAAACGATACCACCAACCACTACACAATTCCAATTCAATTAGGGTTTCCAATTTCCAATTTTCATGGAACCCCTGTCTCTCCCTCCTCTCCCAGTCATGGACGACGCCGAAGACCCTTCCTCCATTTGGGACTTCTCTTACCTCCTCGACTTCGACCTCGACGACCAAGATATTATTATTAATAACAACAACTCTCTCCCTCTTCCCTTAAACGACCACCCCGCTCCAAGCGAGATCCCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCGATACTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCATCCGCTCGCTGCCAGGTCCCTGCCTGCGAGGTCGATATCTCAGAGCTGAAAGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGGCGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAGGGTAAACGGAGCTGTAGAAGGAAGTTAGAGCGGCATAACACCAGAAGGAGAAGAAAGCCTACGGCGGATTCTGGAGGGGCTACTCATAGTGAACTACTTCAACCTGTTGCCGAAAACGAGGAAAACAATTATGATGTGGAAGCTGGAAAAGAATGCTCACTGGCTGAGTATGAATCGTACAGATTGTTCGAATTTGAGTACCGATATCAACGACGTTGGAGTGTCTCTGGATCTTGAAGATGAACCGGCTCCCATTCCGAGCTCGGCTCCTGAAGCCCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCCAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACTGCACTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAATGTCAAGGTAAACATGCATGCACCGAAGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCTTCTCCACATAGCTGGACTGAAGACAACATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAAAAATTTGTACTGAAATGAAGACACTGCAACAAAAATTAGATGTATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATCTGTAGCTCATGCGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGACTTTCTGATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATGTTGTAATTAATAGGACAAGTGATGTTGACATAATGCAACTCCTGAATCACATACATAATGCTAGAAATGCCGTATATCAGAAACATCCGAAAAGTGAAAGTATAATTGTGCACTCTGAAATGAAAGGCTTTATACTTGCTCAGGGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTCCAACTTCTAATGAGAAAATGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGTATGGAAGAGTTGCCTGAAAGATACGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTTTCGGCCAGCTATTTTTGTGTTGGTTTCGGTTGCTGTATGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAGTATTTTTTTGTACTTGTCTTCGAGTTGGTACATATTTGTTGTAACACTAAATAAACTGGTGTTATTGGGATGATTAGGTAGTTTATTACATTGGAAAGCTTAATCCAAGGTTGCTAATTTGTGCATTACCAATTTTATCGGATGTCCAGAGGGACTTGCAGTTGCAGGTGCTGTGACTGCAACGAGTCTGATCATTAATAGTTAAAATTTGTAATTCATGTTACCATTATTACAATTGGGTGTTTATGCTAGATCTCTCTCTAGAAATGTGTAAAGTAAGAAACTTTCATGGAAGTGTGTATTAGGCCTATAATCCTAACTCAACTCCAAGAACAAGTGTGG

Coding sequences of Glyma13g28460

Limit To All Plant Sequences

>Glyma13g28460.3   sequence type=CDS   gene model=Glyma13g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCCTGTCTCTCCCTCCTCTCCCAGTCATGGACGACGCCGAAGACCCTTCCTCCATTTGGGACTTCTCTTACCTCCTCGACTTCGACCTCGACGACCAAGATATTATTATTAATAACAACAACTCTCTCCCTCTTCCCTTAAACGACCACCCCGCTCCAAGCGAGATCCCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCGATACTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCATCCGCTCGCTGCCAGGTCCCTGCCTGCGAGGTCGATATCTCAGAGCTGAAAGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGGCGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAGGGTAAACGGAGCTGTAGAAGGAAGTTAGAGCGGCATAACACCAGAAGGAGAAGAAAGCCTACGGCGGATTCTGGAGGGGCTACTCATAGTGAACTACTTCAACCTGTTGCCGAAAACGAGGAAAACAATTATGATGTGGAAGCTGGAAAAGATTGTTCGAATTTGAGTACCGATATCAACGACGTTGGAGTGTCTCTGGATCTTGAAGATGAACCGGCTCCCATTCCGAGCTCGGCTCCTGAAGCCCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCCAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACTGCACTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAATGTCAAGGTAAACATGCATGCACCGAAGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCTTCTCCACATAGCTGGACTGAAGACAACATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAAAAATTTGTACTGAAATGAAGACACTGCAACAAAAATTAGATGTATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATCTGTAGCTCATGCGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGACTTTCTGATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATGTTGTAATTAATAGGACAAGTGATGTTGACATAATGCAACTCCTGAATCACATACATAATGCTAGAAATGCCGTATATCAGAAACATCCGAAAAGTGAAAGTATAATTGTGCACTCTGAAATGAAAGGCTTTATACTTGCTCAGGGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTCCAACTTCTAATGAGAAAATGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGTATGGAAGAGTTGCCTGAAAGATACGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTTTCGGCCAGCTATTTTTGTGTTGGTTTCGGTTGCTGTATGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG

>Glyma13g28460.4   sequence type=CDS   gene model=Glyma13g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTGGAAGCTGGAAAAGAATGCTCACTGGCTGAGTATGAATCGTACAGATTGTTCGAATTTGAGTACCGATATCAACGACGTTGGAGTGTCTCTGGATCTTGAAGATGAACCGGCTCCCATTCCGAGCTCGGCTCCTGAAGCCCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCCAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACTGCACTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAATGTCAAGGTAAACATGCATGCACCGAAGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCTTCTCCACATAGCTGGACTGAAGACAACATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAAAAATTTGTACTGAAATGAAGACACTGCAACAAAAATTAGATGTATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATCTGTAGCTCATGCGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGACTTTCTGATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATGTTGTAATTAATAGGACAAGTGATGTTGACATAATGCAACTCCTGAATCACATACATAATGCTAGAAATGCCGTATATCAGAAACATCCGAAAAGTGAAAGTATAATTGTGCACTCTGAAATGAAAGGCTTTATACTTGCTCAGGGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTCCAACTTCTAATGAGAAAATGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGTATGGAAGAGTTGCCTGAAAGATACGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTTTCGGCCAGCTATTTTTGTGTTGGTTTCGGTTGCTGTATGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG

Predicted protein sequences of Glyma13g28460

Limit To All Plant Sequences

>Glyma13g28460.3   sequence type=predicted peptide   gene model=Glyma13g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPLSLPPLPVMDDAEDPSSIWDFSYLLDFDLDDQDIIINNNNSLPLPLNDHPAPSEIPQNDRVRKRDPRLTCSNFLAGRVPCACPELDAILEDEGLPGKKRARTARASASARCQVPACEVDISELKGYHRRHRVCLRCANAATVMLNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPTADSGGATHSELLQPVAENEENNYDVEAGKDCSNLSTDINDVGVSLDLEDEPAPIPSSAPEAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPLEYVHDIVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTNVKVNMHAPKLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKKICTEMKTLQQKLDVSLLSKQFRSASGGSICSSCETFALSHTSSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTESMKSNVVINRTSDVDIMQLLNHIHNARNAVYQKHPKSESIIVHSEMKGFILAQGCSQDNKLSVAINSQGIQSRADEKWGVLKVKSPTSNEKMERIPLLKRDIIMSMEELPERYGRRCLGRGFLTFRPAIFVLVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY*

>Glyma13g28460.4   sequence type=predicted peptide   gene model=Glyma13g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMWKLEKNAHWLSMNRTDCSNLSTDINDVGVSLDLEDEPAPIPSSAPEAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPLEYVHDIVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTNVKVNMHAPKLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKKICTEMKTLQQKLDVSLLSKQFRSASGGSICSSCETFALSHTSSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTESMKSNVVINRTSDVDIMQLLNHIHNARNAVYQKHPKSESIIVHSEMKGFILAQGCSQDNKLSVAINSQGIQSRADEKWGVLKVKSPTSNEKMERIPLLKRDIIMSMEELPERYGRRCLGRGFLTFRPAIFVLVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY*

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