Glyma13g28450 - SoyBase

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Report for Sequence Feature Glyma13g28450

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31467400
stop:	31472391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18840	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr5:6282954-6286399 FORWARD LENGTH=482	SoyBase	E_val: 0	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0254	KOG	Predicted transporter (major facilitator superfamily)	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF74	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_G7IFL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sugar transporter ERD6-like protein n=1 Tax=Medicago truncatula RepID=G7IFL9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C5F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C5F9 related cluster n=1 Tax=unknown RepID=UPI000233C5F9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28450

Paralog	Evidence	Comments
Glyma15g10630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g213300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28450

Limit To All Plant Sequences

>Glyma13g28450.1   sequence type=CDS   gene model=Glyma13g28450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTGAGAAGCATGAGGATGTTGAGAGTGGATATTTGCACGAGCCCTTCATTCAACCAGAGGATGCTGCTGCTGCTTGTAAAGAAAATGGATCAGATAAGAGTGTGAAAAATGGATCCATTGGAATGGTTTTGCTTAGCACACTTGTTGCTGTTTGTGGTTCTTTCACATTTGGAACTTGTGTGGGCTATTCAGCACCCACTCAAGCGGCTATCAGGGCAGATCTTAATCTCTCTCTTGCTGAGTTTTCCATGTTTGGTTCATTAGTGACCATTGGTGCAATGCTTGGAGCTATAACCAGCGGCAGGATTACAGATTTCATTGGCCGCAAAGGGGCAATGAGGATTTCAACAGGATTTTGCATTACAGGATGGATAGCTGTCTTCTTCTCTAAGGGTTCTTACTCCCTTGACTTCGGAAGATTTTTCACAGGTTACGGCATTGGAGTTATCTCATACGTGGTTCCTGTATATATAGCAGAAATAGCACCCAAAAATCTTCGAGGAGGACTAGCAACAACAAATCAGCTTTTGATTGTTACTGGAGGGTCAGTCTCATTCTTATTAGGAAGTGTTATAAATTGGAGAGAACTTGCATTAGCGGGGCTAGTGCCTTGCATTTGCTTGCTGGTTGGTTTGTGCTTTATCCCTGAGTCCCCCAGATGGCTGGCTAAGGTTGGCCGTGAAAAAGAATTTCAACTAGCTTTAAGTAGACTTCGGGGTAAAGATGCTGATATTTCTGATGAAGCTGCTGAAATTCTGGATTATATTGAAACTCTTCAAAGTCTTCCTAAGACTAAGCTGTTGGATTTGTTCCAAAGCAAATATGTGCACTCTGTAGTTATTGGGGTCGGCTTAATGGCATGTCAACAATCTGTTGGAATTAATGGCATAGGATTCTACACAGCTGAGATTTTTGTAGCAGCTGGACTTTCTTCAGGAAAAGCTGGTACCATAGCATATGCTTGTATACAGATTCCATTTACATTATTGGGAGCCATTTTGATGGACAAGTCTGGAAGAAGACCTCTTGTAATGGTTTCCGCAGCTGGGACATTCTTAGGTTGCTTTGTTGCTGCCTTTGCTTTCTTTCTCAAGGACCAAAGCTTATTGCCTGAGTGGGTACCTATATTAGCATTTGCTGGCGTTCTGATCTACATAGCAGCATTTTCAATTGGGCTCGGATCAGTTCCATGGGTGATAATGTCTGAGATATTTCCCATACATTTGAAGGGGACTGCTGGAAGCTTGGTGGTTTTGGTGGCTTGGCTAGGAGCTTGGGTAGTTTCATATACTTTCAACTTTCTTATGAGCTGGAGTTCTCCTGGTACATTGTTTTTGTATGCTGGATGTTCCCTCTTAACTATTCTATTTGTAGCAAAATTAGTCCCAGAAACCAAAGGAAAAACTTTGGAAGAGATCCAGGCTTGTATTAGTTCATAG

Predicted protein sequences of Glyma13g28450

Limit To All Plant Sequences

>Glyma13g28450.1   sequence type=predicted peptide   gene model=Glyma13g28450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIEKHEDVESGYLHEPFIQPEDAAAACKENGSDKSVKNGSIGMVLLSTLVAVCGSFTFGTCVGYSAPTQAAIRADLNLSLAEFSMFGSLVTIGAMLGAITSGRITDFIGRKGAMRISTGFCITGWIAVFFSKGSYSLDFGRFFTGYGIGVISYVVPVYIAEIAPKNLRGGLATTNQLLIVTGGSVSFLLGSVINWRELALAGLVPCICLLVGLCFIPESPRWLAKVGREKEFQLALSRLRGKDADISDEAAEILDYIETLQSLPKTKLLDLFQSKYVHSVVIGVGLMACQQSVGINGIGFYTAEIFVAAGLSSGKAGTIAYACIQIPFTLLGAILMDKSGRRPLVMVSAAGTFLGCFVAAFAFFLKDQSLLPEWVPILAFAGVLIYIAAFSIGLGSVPWVIMSEIFPIHLKGTAGSLVVLVAWLGAWVVSYTFNFLMSWSSPGTLFLYAGCSLLTILFVAKLVPETKGKTLEEIQACISS*

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