Glyma13g28430 - SoyBase

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Report for Sequence Feature Glyma13g28430

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31452279
stop:	31458493
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03020	AT	Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein \| chr4:1331704-1334472 REVERSE LENGTH=493	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0266	KOG	WD40 repeat-containing protein	JGI		ISS
PTHR19847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR19847:SF3	Panther	LEC14B-RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7IFM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LEC14B-like protein n=2 Tax=Medicago truncatula RepID=G7IFM0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M199	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M199_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28430

Paralog	Evidence	Comments
Glyma15g10650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g213100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28430

Limit To All Plant Sequences

>Glyma13g28430.2   sequence type=transcript   gene model=Glyma13g28430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAATGTAACACCTTGTATGTGTTGTGTTGTTTACGTATGCAAATTGAGAAGAAATCAAGCAAAGCCAAGGAAATGAAGGGGCTTTGACATTTCCAATTTTCTAATATTTAATATTCGCTCATTCCAATTTTCTAATATTTAATATTCGCTCATTCCAATTTTCATCACAAACACACACTGCTACACCAAAAACCGAAGCAAAACAAGTGAATCAAGACTCTACTTCGTGTTCCAATCAGAGATAGAGAATTATGAGTCGATTGAACAAAAATAAAAGTATTTGTAGTGATGGTAGTGCCAGTAATGAATCTTCTTCAAGTGGAATAACAGGAGAAAGGGATGATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTTGTGTTGTTCCTGGTAGGATGAGGTTACCTGTATCTACTGTGAGAATGTTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGATGCCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGGTCGGATGAAAAGCCGTGCGTATGTTTCACAGTTTTCGGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCGGGGCTGGAAAGTTAAAAAGGACATCTCTGCTAGAATGTTACGATGGACAGTAACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACTGTGGGATCTGGCACAATAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGGGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATACCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATATTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCAATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAGTCATTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCGTATAGCACTGGTCAAAAGTACATTTACACAGGGTCTAGTGATTCATCTGTTTACATATATGACCTGGTAAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGGGATTGTAGTTGGCACCCCTATTATCCAATGATGATCTCTTCGGCTTGGGATGGTGATGTTGTCAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCGTAGGAGAAATTTGCTTTATCTATAGTTCATGCTCTTTGTACATATGTGTCTGGATCCATACTATATTTTGCTAGCTACATGGGATTTCTCGTGTCTTTCTTTTTACTTCTTCTATTTTCCTAGTTATAGAAAGGGTCCCCTAAAAAAAATCTGCTACATTGATCTATACCTTGTTCTTTACGTTTCTATGGATGAACATAAAGCCTCGGTTAGTGTACAGTGTTGTCCCCTATTAAACGAGCACAAGTCCTTGCTGCCCTATTATATCTTCATAACTTTGGGCTTTGAAGTTTGCATTGATGATGAAGGAATTTTTTTAAATATTTG

Coding sequences of Glyma13g28430

Limit To All Plant Sequences

>Glyma13g28430.1   sequence type=CDS   gene model=Glyma13g28430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGATTGAACAAAAATAAAAGTATTTGTAGTGATGGTAGTGCCAGTAATGAATCTTCTTCAAGTGGAATAACAGGAGAAAGGGATGATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTTGTGTTGTTCCTGGTAGGATGAGGTTACCTGTATCTACTGTGAGAATGTTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGATGCCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGGTCGGATGAAAAGCCGTGCGTATGTTTCACAGTTTTCGGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCGGGGCTGGAAAGTTAAAAAGGACATCTCTGCTAGAATGTTACGATGGACAGTAACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACTGTGGGATCTGGCACAATAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGGGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATACCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATATTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCAATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAGTCATTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCGTATAGCACTGGTCAAAAGTACATTTACACAGGGTCTAGTGATTCATCTGTTTACATATATGACCTGGTAAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGGGATTGTAGTTGGCACCCCTATTATCCAATGATGATCTCTTCGGCTTGGGATGGTGATGTTGTCAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCGTAGGAGAAATTTGCTTTATCTATAG

>Glyma13g28430.2   sequence type=CDS   gene model=Glyma13g28430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGATTGAACAAAAATAAAAGTATTTGTAGTGATGGTAGTGCCAGTAATGAATCTTCTTCAAGTGGAATAACAGGAGAAAGGGATGATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTTGTGTTGTTCCTGGTAGGATGAGGTTACCTGTATCTACTGTGAGAATGTTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGATGCCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGGTCGGATGAAAAGCCGTGCGTATGTTTCACAGTTTTCGGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCGGGGCTGGAAAGTTAAAAAGGACATCTCTGCTAGAATGTTACGATGGACAGTAACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACTGTGGGATCTGGCACAATAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGGGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATACCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATATTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCAATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAGTCATTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCGTATAGCACTGGTCAAAAGTACATTTACACAGGGTCTAGTGATTCATCTGTTTACATATATGACCTGGTAAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGGGATTGTAGTTGGCACCCCTATTATCCAATGATGATCTCTTCGGCTTGGGATGGTGATGTTGTCAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCGTAGGAGAAATTTGCTTTATCTATAG

Predicted protein sequences of Glyma13g28430

Limit To All Plant Sequences

>Glyma13g28430.1   sequence type=predicted peptide   gene model=Glyma13g28430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRLNKNKSICSDGSASNESSSSGITGERDDHLDHEIAQLTKLRSSPHELLGCVVPGRMRLPVSTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVGRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDRGWKVKKDISARMLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTIESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIYSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWDGDVVRWEFPGSDEAPASPNKREGRIRRRNLLYL*

>Glyma13g28430.2   sequence type=predicted peptide   gene model=Glyma13g28430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRLNKNKSICSDGSASNESSSSGITGERDDHLDHEIAQLTKLRSSPHELLGCVVPGRMRLPVSTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVGRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDRGWKVKKDISARMLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTIESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIYSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWDGDVVRWEFPGSDEAPASPNKREGRIRRRNLLYL*

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