SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g28360

Feature Type:gene_model
Chromosome:Gm13
Start:31394790
stop:31396125
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g28360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21570AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7600297-7600707 REVERSE LENGTH=136 SoyBaseE_val: 1.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1M190UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M190_SOYBN SoyBaseE_val: 3.00E-126ISS
UniRef100_O49389UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT4g32020/F10N7_170 n=1 Tax=Arabidopsis thaliana RepID=O49389_ARATH SoyBaseE_val: 4.00E-09ISS

Expression Patterns of Glyma13g28360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28360
ParalogEvidenceComments
Glyma15g10710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g212500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g28360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g28360
>Glyma13g28360.1   sequence type=CDS   gene model=Glyma13g28360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACGGAGGTTCTACGGCCACAAGATTGTTTCACCCAACGCATCGGTGTTCCACCGCCTGGCTTTTCCCGGCGAAGAACCTATGGTACCCACCACAACAACAAAAACAATAACGTTAACAATTATTTCAGGGGTAACCGGAAGCCGACAACCCGACCCGAACAAAGAAAACGGGTTGTGGACAAAAGGCCCAGTTTAGATGATTCGAGGTTTTCGAGTTTGGAGATGGAGAAGGTCACGATTCTTCGGAGGGGGGAATCGCTCGATTCGAAGCTGAAAACAGAGGCTTTGAAGAAGGAAGGTGATAATTTGGTCGTGGTTGGGACCCAGAGGCTCGGACCCGACCCGGATATGGTCCCGAAGCAGATCCGGATCGTGGATTTCAGGTCCGGGCGCGAGATTTACGCCGGATCCGCGTTCGCGGTGTCGCCGTCGCCGAGCGCGCTGCCCTTGCCGTCTTTTTCGAAGAGGCAGCCGGCGGTGGCGGTTGCCGACTCTGCGACCCGTGATCTTAGGCGTCTTCTCCGGCTTGAATGA
Predicted protein sequences of Glyma13g28360
>Glyma13g28360.1   sequence type=predicted peptide   gene model=Glyma13g28360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTEVLRPQDCFTQRIGVPPPGFSRRRTYGTHHNNKNNNVNNYFRGNRKPTTRPEQRKRVVDKRPSLDDSRFSSLEMEKVTILRRGESLDSKLKTEALKKEGDNLVVVGTQRLGPDPDMVPKQIRIVDFRSGREIYAGSAFAVSPSPSALPLPSFSKRQPAVAVADSATRDLRRLLRLE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo