Glyma13g28340 - SoyBase

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Report for Sequence Feature Glyma13g28340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31382570
stop:	31385284
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21530	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr3:7582828-7584448 REVERSE LENGTH=458	SoyBase	E_val: 2.00E-170	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_B9RSW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RSW0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M188	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M188_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28340

Paralog	Evidence	Comments
Glyma15g10720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g212300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28340

Limit To All Plant Sequences

>Glyma13g28340.1   sequence type=CDS   gene model=Glyma13g28340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGTGTCATTAGAAGAAAACTCCGGCACCTTTACTCAAGGATATTGTGGCTACTATGGAAGCGTCCCAAGTCTAAAGTTGTTATCAAAAGGTTTAGAAAATTGAACTTTAAGGGTCACCACAGAGCAGAATTGCGTAAAAACAAATCTACAAGTGACTCAAATGGCCTCTTAGTTGAGTCTCAATCTGGAAGGCCTATTAGGATTGCTACATTCAATGTTGCAATGTTTTCACTTGCACCTGCTGTTTCAGAATTTGATGAATGGGTTGTCTCCAATCATGAGCATGTATCAAACAAGAAGAATCTTCTTGCAAAGGGTGATTTTCCAAAGAGTATACTAAAGCAATCTCCATTGCATGCCTCTTTGGACAAGGCTCAGAATCTTTCTGCCTCCAATATTCTACCACGTTCGAATTTGAAGGTTTCTATCAATCTCCCTGACAATGAGATTTCGTTGGCAAATAGTAGATTGCTTGCTTCGATGGAGAGAAAAGAGGGTACTTCAGATACAATCACGGGAAATGTTTCTGGCAGGCATCAAGTTCCAGCAAGGTCTCCTGTGTGCTTTCCTTTCGTTATGAATTACTGTGAGGACACTGAGAGGTTCACATGCAGCAGAAGCATCATGGAAGTTCTGAGGGAGATTGATGCTGATGTGCTGGCCCTGCAGGATGTGAAGGCAGAGGAAGAGAAGAACATGAAGCCTCTTTCTGATTTGGCAGCTGCCTTGGGGATGAAGTATGTGTTTGCTGAAAGTTGGGCTCCAGAATATGGAAATGCCATCTTATCCAAATGGCCTATTAAGAAGTCGAGAGTTCAGAAGATTGCTGATGATGATGATTTCAGGAATGTTTTGAAGGCTACAATTGATGTGCCCTGGGCAGGAGAAATAAATTTCCACTCTACTCAACTTGACCACTTAGATGAGAGTTGGAGAATGAAGCAAGTACACGCAATAATCCGCTCCAATGACCCTCCTCACATCTTGGCAGGAGGACTTAATTCTCTATATGGAGCTGATTACTCATCTGAGAGATGGACAGATATTTTTAAGTATTATGAGAAACTTGGAAAGCCTAGGCCAAGGTCAGAAGTGATGAACTTCATGAAATCAAAAGGCTATGTTGATGCAAAGGATTATGCAGGAGAATGCGAGCCCATTGTCATCATTGCCAAAGGCCAAAATGTGCAGGGGACATGCAAGTATGGCACAAGAGTGGATTACATTTTGGCATCACCAAACTCACCGTACAAATATGTACCAGGGTCCTACTCAGTCATTTCATCAAAAGGAACTTCTGATCACCATATAGTGAAAGTGGACATTATGAAAGTAAATGCACCAGCTCAGAAAAATGTCATTAGGCAGTGCAGGAAACTAAAGAGGAAAGTAGTGAAAATAACGCCACCTTGTTCTGCAACAGGTGTGAGGGAATCAACCCCACCTCCCAAAATACTTGTGCCAAAAGAAATTGATTGA

Predicted protein sequences of Glyma13g28340

Limit To All Plant Sequences

>Glyma13g28340.1   sequence type=predicted peptide   gene model=Glyma13g28340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGVIRRKLRHLYSRILWLLWKRPKSKVVIKRFRKLNFKGHHRAELRKNKSTSDSNGLLVESQSGRPIRIATFNVAMFSLAPAVSEFDEWVVSNHEHVSNKKNLLAKGDFPKSILKQSPLHASLDKAQNLSASNILPRSNLKVSINLPDNEISLANSRLLASMERKEGTSDTITGNVSGRHQVPARSPVCFPFVMNYCEDTERFTCSRSIMEVLREIDADVLALQDVKAEEEKNMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKKSRVQKIADDDDFRNVLKATIDVPWAGEINFHSTQLDHLDESWRMKQVHAIIRSNDPPHILAGGLNSLYGADYSSERWTDIFKYYEKLGKPRPRSEVMNFMKSKGYVDAKDYAGECEPIVIIAKGQNVQGTCKYGTRVDYILASPNSPYKYVPGSYSVISSKGTSDHHIVKVDIMKVNAPAQKNVIRQCRKLKRKVVKITPPCSATGVRESTPPPKILVPKEID*

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