Glyma13g28330 - SoyBase

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Report for Sequence Feature Glyma13g28330

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31373994
stop:	31378593
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03000	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr4:1324602-1327348 FORWARD LENGTH=814	SoyBase	E_val: 6.00E-172	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR10044	Panther	INHIBITOR OF APOPTOSIS	JGI		ISS
PTHR10044:SF81	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7IFN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Baculoviral IAP repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IFN5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M187	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M187_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28330

Paralog	Evidence	Comments
Glyma15g10730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g212200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28330

Limit To All Plant Sequences

>Glyma13g28330.1   sequence type=CDS   gene model=Glyma13g28330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATTGGTAGCCAGTGGTAGCAGTCAAATGGCTCCTTCAGTTTCTGTCCAAGAAAAAGGGAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGCGAGCCAAATAAGATTATTCCTTCCCCTCAGCATGAAAGCCTCAGCAATGAATTTTCTGCTGAAAAGTTCGAAATAACCACAGGTCATGGACAAGCTAGTGCTTCTGACATGTGCAGTGTAAGCCAAGATCATTCTGATGGGTTGAAGCTTGACCTTGGATTGTCTAGTCCTTTACCTTCATCTGACGTCAGGCTTAGCCAACCTAAGGAGGAACTTGAGGTTGATGAATTCCATGATGCTGATTGGAGTGATCTCACTGAAGCCCAATTGGAAGAACTTGTTCTGAGCAATTTGGACACCATTTTCAAGAGTGCAGTAAAAAAAATTGTTGCATGTGGCTACATTGAAGACGTTGCTACAAAGGCCATCTTAAGGTCTGGCATTTGTTATGGATGTAAAGATGCTGTGTCTAATGTAGTTGACAAGGGTTTAGCATTTCTTAGAAATGGCCAAGAGATTGATCCTTCACGAGAGCACTATTTTGAAGATTTAGTGCAGCTAGAGAAGTATATTTTGGCTGAATTGGTCTGTGTTCTTCGAGAGGTTAGGCCATTGTTCAGTACCGGGGATGCAATGTGGCGTTTGCTGATTTGTGACATGAATGTGTCACTTGCTTGTGCAATGGATGATGACCCTTCAAGCAGTTTAGGTAGTGATGGCATTGATGATGGTTGTTCTTCTGTTCAGACTGAACCACAGTTAAAGTTAGAAACAAAAGGTCCTGAATTAAGTCCTTGTAAATCAATCTCCTCAGGTTCTCAACCCGAGAAATCCTCTGTGGCAGGAAATACTGGTTTGGACAAGTCAAAGAAATCTCAAATTCTTGTTGGACCATCGGGGAAAGAGGCTGCTAATTCTGGATGTGAATTTATTGATAAATCTTCTAGTACTTCTGGGACATCTCAATCTCCTTTGGTGGAAGAAAAGTGTGGGAGCGTCAGAAAGGTCCATTCCAGTAGCAATAAGAGAGACTACATTCTTCGACAGAAGTCATTCCACATGGAAAAAAGTTATCGGACATATGGACCTAAAGGGTCTTCAAGAGGAGGAAGACTGAATGGCTTGAATGGATTAATCTTGGATAAAAAACTTAAATCTGTATCTGAGTCTACTACCATAAACTTAAAGAGTGCATCGATAAACATAAGTAAGGCAGTGGGAGTTGATGTGACACAAGACAATTTAAATGCTGATTTTTCATCTAATGATGGACCATCAACCCCCACTGCATTTAGTCTGGATTCTACTGTTACTGTTTCTCAGTCAACCAATACTTTATCTTCAGTGCATGAAGCAAATGCTATACCTGCAGTTGGTAGCCCAAATGTATTATCAGCTACAGATACTGATCTTTCTCTTTCTTTGTCTTCAAATAGTAAGTCTCCTACAACAACTGTCCGCTGCAATAATGAGGCACCTAATAGTAGTTGTATGGGGATACCTCATGACAGGTCCCTGGGGAAGTGGATACCCCAAGATAGAAAGGATGAGATGATTTTGAAGCTAGTTCCAAGGGTTCGGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCTGCTCGTCGGCTGAGTAAGGATAGGGCCGAGCTTAAGACACTGAGACAAGAGAAAGATGAAGTTGAACGTCTTAAAAAAGAAAAACAATCTCTAGAGGAAAACACTATGAAGAAGATTTCTGAGATGGAAAATGCCTTGTCTAAAGCGAGTGCACAGGTAGAAAGAACCAATGCTGATGTCCGGAAACTTGAGGTGGAAAATGCTGCACTGAGGAAAGAGATGGAGGTTGCTAAGTTACAAGCGGCTGAGTCAGCCACAAGCTGTCAAGAGGTCTCAAGGAGGGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAAGCAGAAATCCTTGTTTCAGGAAGAGCTAATGAATGAAAAACACAAATTAGCTCAGTTGCAGCAAGAATTAGAGCAAGCTAAAGTGCAACAGCAGCAAGTCGAGGCTAGGTGGCAGCAAGCAGCAAAGGCAAAAGAAGAACTCCTCCTGCAGGCCAGTTCTATAAGAAAAGAAAGGGAACAAATTGAGGAGTCAGCAAAATCAAAGGAGGATATGATCAAACTGAAAGCAGAGGAAAATCTACACAGGTACAGAGATGACATCCAGAAACTTGAAAAAGAAATTGCACAACTGAGACAGAAGACCGACTCTTCTAAAATTGCTGCACTGAGAAGGGGAATTGATGGAAACTATGTCAGCAGCTTTATGGACGTGAAAAGCATGGCTCTGAAAGAATCGCGGGCCACTTTTATCTCAGAAATGGTTTCAAATTTAAATGACTACTCTTTGATAGGGGGTGTAAAGCGGGAAAGAGAATGTGTCATGTGCCTTTCTGAGGAGATGTCTGTTGTATTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGATCTCCACGAGAAACAAGGTATGCAAGACTGTCCTTCTTGCAGGAGCCCCATCCAGAGGCGTATTTCTGTCCGATTTGCCCGTACATAA

Predicted protein sequences of Glyma13g28330

Limit To All Plant Sequences

>Glyma13g28330.1   sequence type=predicted peptide   gene model=Glyma13g28330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLVASGSSQMAPSVSVQEKGSRNKRKFRADPPLGEPNKIIPSPQHESLSNEFSAEKFEITTGHGQASASDMCSVSQDHSDGLKLDLGLSSPLPSSDVRLSQPKEELEVDEFHDADWSDLTEAQLEELVLSNLDTIFKSAVKKIVACGYIEDVATKAILRSGICYGCKDAVSNVVDKGLAFLRNGQEIDPSREHYFEDLVQLEKYILAELVCVLREVRPLFSTGDAMWRLLICDMNVSLACAMDDDPSSSLGSDGIDDGCSSVQTEPQLKLETKGPELSPCKSISSGSQPEKSSVAGNTGLDKSKKSQILVGPSGKEAANSGCEFIDKSSSTSGTSQSPLVEEKCGSVRKVHSSSNKRDYILRQKSFHMEKSYRTYGPKGSSRGGRLNGLNGLILDKKLKSVSESTTINLKSASINISKAVGVDVTQDNLNADFSSNDGPSTPTAFSLDSTVTVSQSTNTLSSVHEANAIPAVGSPNVLSATDTDLSLSLSSNSKSPTTTVRCNNEAPNSSCMGIPHDRSLGKWIPQDRKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLSKDRAELKTLRQEKDEVERLKKEKQSLEENTMKKISEMENALSKASAQVERTNADVRKLEVENAALRKEMEVAKLQAAESATSCQEVSRREKKTQMKFQSWEKQKSLFQEELMNEKHKLAQLQQELEQAKVQQQQVEARWQQAAKAKEELLLQASSIRKEREQIEESAKSKEDMIKLKAEENLHRYRDDIQKLEKEIAQLRQKTDSSKIAALRRGIDGNYVSSFMDVKSMALKESRATFISEMVSNLNDYSLIGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNDLHEKQGMQDCPSCRSPIQRRISVRFART*

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