Glyma13g28320 - SoyBase

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Report for Sequence Feature Glyma13g28320

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31364577
stop:	31366099
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04830	AT	Annotation by Michelle Graham. TAIR10: methionine sulfoxide reductase B5 \| chr4:2445902-2446872 FORWARD LENGTH=139	SoyBase	E_val: 5.00E-79	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008113	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide-methionine (S)-S-oxide reductase activity	SoyBase	N/A	ISS
KOG0856	KOG	Predicted pilin-like transcription factor	JGI		ISS
PTHR10173	Panther	METHIONINE SULFOXIDE REDUCTASE	JGI		ISS
PTHR10173:SF0	Panther	PEPTIDE METHIONINE SULFOXIDE REDUCTASE	JGI		ISS
PF01641	PFAM	SelR domain	JGI		ISS
UniRef100_C6SXW1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXW1_SOYBN	SoyBase	E_val: 3.00E-97	ISS
UniRef100_G7IFP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide methionine sulfoxide reductase msrB n=1 Tax=Medicago truncatula RepID=G7IFP1_MEDTR	SoyBase	E_val: 7.00E-87	ISS

Expression Patterns of Glyma13g28320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28320

Paralog	Evidence	Comments
Glyma15g10750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g212000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28320

Limit To All Plant Sequences

>Glyma13g28320.2   sequence type=transcript   gene model=Glyma13g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGATTGCTCTCCTGTGGATTCGTTTCTGCTTTGTGCAGCTTTTAGTTGGTTCAGTTCCATGCACTCTCTTGTTGGTAGTGGTTTTATTGGAAAATAGAAGTGCTATTTATTTGATAGTTAAAATATTGACTTGCTCCAATTAGTCTTTGTTAGAAGTTTCAGTCCTATAATAAAATTGGAAAAAACGGTAAGTTTTAGTTCCTGTACAATTTTTTGTGACAGTTAATCACTGAATTTTTATGTAGCTGCATCAAAAAGTTTTTTAGTGTTAGCGACTAAGTCCAAAATTTAACTTTTTATGTATGTGCAGATACTAAAACTTAACAGTTCTTACAATCGAAATAATTATAAGGGCCAATTGAATAATTTAACCTTATTTTGTAAGTGTAAACACTTACTACCCTTTAAGCCATGAAATTGGTTTACGTGAGTTGGATTGTAACTTTTCATGCACCGGGAGCATGTGCAGATTGAAGGGTACAGGAGAATATAACAAGTTTTATGAAGAAGGAATTTACAACTGTGCTGGCTGTGGGACTCCTCTTTACAAGTCTTCAACCAAGTTTGATTCTGGTTGTGGTTGGCCTGCTTTCTTTGAGGGTTTTCCCGGTGCCATCGATCGATCCCCTGACCCAGATGGGAGGAGGACTGAGATAACTTGTGCAGCATGTGGTGGGCACTTGGGTCATGTTTTCAAAGGAGAGGGATTCAAGACCCCAACTGATGAACGCCATTGTGTCAATAGTATTTCTGTCAAATTTGTTCCAGGAAATGCTAGTTCTTCAATATGAAACCCTACATTTACTCTATTGGAGGTGTCTATTGAAAGATTGTCTTGTTTGTAGTCTTTTATAGACAGTTAGCTCTGAAGGATAAAATCCTTTTCTTTGTTTAGTCTTTTACCTTGCCTTTCTGTTTCATCGAGTAAAGATTTGGTAGGTCTGCATGAATCATATATAAATCAGCATTTCTTGATATCTAATATATATATATATACACACACTATTGTTGAGATTAATTC

Coding sequences of Glyma13g28320

Limit To All Plant Sequences

>Glyma13g28320.1   sequence type=CDS   gene model=Glyma13g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCACCAACACCGATTCAGAAAACTGAAGAGGAGTGGAAGGTCATTCTCTCCCCCGAGCAGTTTCGGATCCTTCGCCAGAAAGGAACTGAATTGAAGGGTACAGGAGAATATAACAAGTTTTATGAAGAAGGAATTTACAACTGTGCTGGCTGTGGGACTCCTCTTTACAAGTCTTCAACCAAGTTTGATTCTGGTTGTGGTTGGCCTGCTTTCTTTGAGGGTTTTCCCGGTGCCATCGATCGATCCCCTGACCCAGATGGGAGGAGGACTGAGATAACTTGTGCAGCATGTGGTGGGCACTTGGGTCATGTTTTCAAAGGAGAGGGATTCAAGACCCCAACTGATGAACGCCATTGTGTCAATAGTATTTCTGTCAAATTTGTTCCAGGAAATGCTAGTTCTTCAATATGA

>Glyma13g28320.2   sequence type=CDS   gene model=Glyma13g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAGATTGAAGGGTACAGGAGAATATAACAAGTTTTATGAAGAAGGAATTTACAACTGTGCTGGCTGTGGGACTCCTCTTTACAAGTCTTCAACCAAGTTTGATTCTGGTTGTGGTTGGCCTGCTTTCTTTGAGGGTTTTCCCGGTGCCATCGATCGATCCCCTGACCCAGATGGGAGGAGGACTGAGATAACTTGTGCAGCATGTGGTGGGCACTTGGGTCATGTTTTCAAAGGAGAGGGATTCAAGACCCCAACTGATGAACGCCATTGTGTCAATAGTATTTCTGTCAAATTTGTTCCAGGAAATGCTAGTTCTTCAATATGA

Predicted protein sequences of Glyma13g28320

Limit To All Plant Sequences

>Glyma13g28320.1   sequence type=predicted peptide   gene model=Glyma13g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPTPIQKTEEEWKVILSPEQFRILRQKGTELKGTGEYNKFYEEGIYNCAGCGTPLYKSSTKFDSGCGWPAFFEGFPGAIDRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSISVKFVPGNASSSI*

>Glyma13g28320.2   sequence type=predicted peptide   gene model=Glyma13g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCRLKGTGEYNKFYEEGIYNCAGCGTPLYKSSTKFDSGCGWPAFFEGFPGAIDRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSISVKFVPGNASSSI*

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