Glyma13g28290 - SoyBase

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Report for Sequence Feature Glyma13g28290

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31339762
stop:	31344246
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06270	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:1896763-1897887 FORWARD LENGTH=348	SoyBase	E_val: 1.00E-178	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF160	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9RSV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RSV0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BF25	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BF25 related cluster n=2 Tax=unknown RepID=UPI000233BF25	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28290

Paralog	Evidence	Comments
Glyma15g10770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g211800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28290

Limit To All Plant Sequences

>Glyma13g28290.3   sequence type=CDS   gene model=Glyma13g28290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCCTCAGTGAGTGGCTCTAGAGACTTCAGAGAACTTGGACCTTACTGTGCCCAAAGGAAGCACATTCTCACTCAGAGTTTATTGCAATTTGTTCCTGTCCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAAGAAAACCAAGATAGTTTTAGCATTAGGACACAGTTTCAAGGCAACCCCAGTGTCCATTTCTTTGGTGTCTACGATGGACATGGCGAATTTGGTGGCCAGTGTTCAAATTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCTAGTGACATTGCATTGTTGGAGGACCCTGTTAAGGCCTACACCTCTGCATTCCTGACCACGAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGCACCACGGCAATTACGGTGCTGGTTATTGGGAACACCCTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTGGCTGTTAAGGACGGGAACCGGGTTGTTGCGGAGGACTTGTCTTCTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGATGGTTCCTGGAGCTGCTTTTACAAGGAGTGTTGGGGATAAGTTGGCTGAGACTATTGGTGTTATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCTCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTAGAACATGAGGGTCGAACAGATGATATAACAATTATCATAGTTCAGATCAAAGGCCTGTCTAATTCAGTTACATCTGGACATGGAGCAAGTGAGATCAATGTCAGTACTGTAACAAGGACAAAGAGCAAGAGGGTAAAGGGAGCATCTGAAATATCTGCCACTACTGGGTTAGATGTGTATCGTTCAGTCAGGAATGGTTTCTCTGATTTACAGTCCTGTCCTCAGCATGTGGTCTCAACTAGAAGCCCAGCCATAGTGGTCCCCTCTCCAGCATGTCAAACTCCAGTTGAATTGGTACAGTCACGCTAG

Predicted protein sequences of Glyma13g28290

Limit To All Plant Sequences

>Glyma13g28290.3   sequence type=predicted peptide   gene model=Glyma13g28290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCVHGKCCTRYPSPSVSGSRDFRELGPYCAQRKHILTQSLLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFSIRTQFQGNPSVHFFGVYDGHGEFGGQCSNFVKDRLVENLSSDIALLEDPVKAYTSAFLTTNDDLHKNEIDDSLSGTTAITVLVIGNTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDKLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSVTSGHGASEINVSTVTRTKSKRVKGASEISATTGLDVYRSVRNGFSDLQSCPQHVVSTRSPAIVVPSPACQTPVELVQSR*

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