Glyma13g28280 - SoyBase

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Report for Sequence Feature Glyma13g28280

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31329469
stop:	31331182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18930	AT	Annotation by Michelle Graham. TAIR10: Adenosylmethionine decarboxylase family protein \| chr5:6312172-6313215 REVERSE LENGTH=347	SoyBase	E_val: 8.00E-144	ISS
GO:0006596	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process	SoyBase	N/A	ISS
GO:0006597	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermine biosynthetic process	SoyBase	N/A	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004014	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosylmethionine decarboxylase activity	SoyBase	N/A	ISS
KOG0788	KOG	S-adenosylmethionine decarboxylase	JGI		ISS
PTHR11570	Panther	S-ADENOSYLMETHIONINE DECARBOXYLASE	JGI		ISS
PF01536	PFAM	Adenosylmethionine decarboxylase	JGI		ISS
UniRef100_I1KN62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Glycine max RepID=I1KN62_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1M181	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M181_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28280

Paralog	Evidence	Comments
Glyma15g10780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g211700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g28280

Limit To All Plant Sequences

>Glyma13g28280.1   sequence type=CDS   gene model=Glyma13g28280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTCGCATTCTCAGGTTTCGAAGGCTTCGAGAAGAGGCTGGAGCTCCATTTCTTTGGCGACGACCCAACTATCCTCCAACTAGGCCTCAGAAAACTCTCCTTCGAGTGCATACAACAAACCCTAGAAGCAGTCCAATGCACTGTCGTTTCAGCCGTTGGAAACTCCTACTTTGACGCTTATGTGTTATCAGAATCAAGCCTCTTTGTGTACCCAACAAAGATCATCATCAAAACGTGTGGAACCACGCAGCTTCTCAAATCCATAACTCCCTTAATCTTCTACGCACAGACCCATCTCGGTCTCACTCTCTCTTTATGTCGCTACACCCGCGGAAGCTTCATCTTTCCTCTGTCACAACCCTTCCCTCACACGAGCTTCGAACACGAAGTTACTTACTTGGAAACAACCCTTCCTTCGGACCTGTGTTTCAGAAAAGCCTCCATCATGCCCTCGAAATCCTCCTCACACGCGTGGCACGTGTTCACCGCCACGAATATTCCTCATCATCACTCTCGCGCTCTTTACAGCGAAAGGCACGCTTACACCATGGAAATCTGCATGACCGACCTAGACCCCGTCCTCGCAAGAAAGTTTTTCCGCCGCGCCGGCGACGGAAAAACCGGCGACTCCGCCGGGAAGGAGATGACGGAGATCACCGGAGTTGACGAGATTAACCCGCAGGCGCTTGTGTGCGATTTCGCGTTCGACCCGTGCGGGTACTCCATGAATGGCATAGATGGGGAGTGGTACTCCACGATTCACGTGACGCCGGAAGACGGTTACAGCTACGCGAGTTTCGAATGTGTGGGGTCCGTGAATGATGACGTGGACATACTCCACGTGTTGAGGAAGGTGGTGCAGATATTCCGACCGGGGACGATGTCGGTCTCTACGACGTCGTTGGGGAGCGAGATGTGGAGAGAGGTATCGGGTGCGGTGGAGCCCATGGGAATGAAGTTGAGGAGCTGCGCGATGGACCAGTTCCCGGATTCTGGGAGCGTTGTCTTTCAAACGTTTACGCCGCTTCGCCGGAAAAGTGCACACTAG

Predicted protein sequences of Glyma13g28280

Limit To All Plant Sequences

>Glyma13g28280.1   sequence type=predicted peptide   gene model=Glyma13g28280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFAFSGFEGFEKRLELHFFGDDPTILQLGLRKLSFECIQQTLEAVQCTVVSAVGNSYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSITPLIFYAQTHLGLTLSLCRYTRGSFIFPLSQPFPHTSFEHEVTYLETTLPSDLCFRKASIMPSKSSSHAWHVFTATNIPHHHSRALYSERHAYTMEICMTDLDPVLARKFFRRAGDGKTGDSAGKEMTEITGVDEINPQALVCDFAFDPCGYSMNGIDGEWYSTIHVTPEDGYSYASFECVGSVNDDVDILHVLRKVVQIFRPGTMSVSTTSLGSEMWREVSGAVEPMGMKLRSCAMDQFPDSGSVVFQTFTPLRRKSAH*

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