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Report for Sequence Feature Glyma13g28271

Feature Type:gene_model
Chromosome:Gm13
Start:31309348
stop:31315842
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g28271
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15475AT Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein | chr4:8845927-8848701 FORWARD LENGTH=610 SoyBaseE_val: 0ISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI ISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF67Panther F-BOX/LRR PROTEIN-RELATED JGI ISS
PF00646PFAM F-box domain JGI ISS
UniRef100_G7IFP9UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7IFP9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233BF22UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BF22 related cluster n=1 Tax=unknown RepID=UPI000233BF22 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g28271
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g28271 not represented in the dataset
Glyma13g28271 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28271
ParalogEvidenceComments
Glyma15g10791 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28271 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g211600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g28271
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g28271
>Glyma13g28271.1   sequence type=CDS   gene model=Glyma13g28271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGGCCACGATTGGATCAACACGCTGCTCCCCGACGAGTTACTCATTGAGATCTTCCGCCGCCTGGACTCTAAGTCCAACCGCGACGCCAGCTCCCTCGTCTGCACGCGGTGGCTCCGCCTCGAGCGCCTCACACGCGCCGCCATCCGCATCGGCGCCTCCGGCTCCCCCGACCTCTTGATCCACCTCCTCGCCGCGCGATTCTCCAACATCACCACCGTTCACATCGATGAGCGCCTCTCTGTTTCAATCCCCGCTCACCTCGGGAGAAGACGCTCGAGCGGCAATTCCTCGGTGAAGCTGCACGACGTGAATGATAAGCACGGCTCTGCCTCTGATCAGAGCGATTTGGATTCACTCTGTTTATCTGATTCTGGTTTGGCTTCTCTCGCCGAAGGCTTTCCCAAGCTCGAGAAGCTGAGGTTAATTTGGTGTTCTAACGTCACTAGCGAGGGGTTGTCATCCCTAGCTAGGAAATGCACTTCTTTGAAATCCTTGGACTTGCAGGGTTGCTATGTTGGAGATCAAGGTCTAGCTGCTATTGGACAGTGTTGCAAACAACTTGAAGATTTGAATCTGCGTTTCTGTGAAGGTTTGACTGATAATGGTTTGGTTGAATTAGCATTGGGTGTGGGAAATGCGTTAAAATCTCTTGGAGTAGCAGCTTGTGCCAAAATAACTGACGTTTCAATGGAAGTTGTGGGATCACAGTGCAGATCCCTTGAGACCTTGTCATTGGACTCTGAGTTCATCCATAATAAAGGGGTGCTTGCTGTGATTAAAGGATGTCCACATTTGAAAGTTCTAAAGCTGCAATGTATTAATCTTACAGATGATACTCTAAATGTTGCAGGCACTAGCTGCTTGTCTTTGGAGTTATTGGCTTTATATAGTTTTCAGAGATTTACTGATAAGGGTTTGTGTGCTATTGGGAATGGATGTAAGAAGTTAAAGAACTTGACTTTAAGTGATTGCTATTTCCTCAGTGACAAGGGTTTGGAAGTAATTGCTACTGGCTGCAAGGAACTTACTCATCTTGAAGTGAATGGATGCCACAATATTGGAACTTTGGGGCTAGAATCTGTTGGAAAATCCTGCCAACATCTCTCTGAGTTAGCATTGCTTTACTGCCAAAGAATTGGTGATGCTGGTCTTGTCCAGGTTGGACAGGGATGCAAATTCTTGCAAGCACTTCAATTGGTAGATTGTTCAAGCATTGGAGATGAAGCCATGTGTGGCATAGCTAGTGGCTGTAGGAATCTAAAGAAACTTCATATTCGTCGCTGTTATGAGATTGGGAACAAGGGGATCATTGCTGTTGGTGAGAAGTGTAAGTTGCTAACAGATCTTAGCATTCGATTTTGTGATAGGGTTGGCGACAGAGCTCTTATTGCTATAGCTGAGGGTTGTTCCCTTCATTATCTGAATGTTAGTGGTTGCCATCTAATTGGAGATGCTGGAGTGATAGCCATTGCAAGGGGGTGCCCTCAACTATGTTATTTGGATGTGAGTGTATTGCAGAAGTTAGGTGATATAGCTATGGCTGAATTGGGAGAACACTGTCCATTGTTGAAAGAAATAGTACTCTCACACTGTCGACAAATAACAGATGTTGGGTTAGCACATCTTGTAAAAGGTTGCTGCACAGTGCTTGAGTCATGCCACATGGTTTATTGCTCTGGTGTAACTTCAGTTGGAGTAGCAACTGTGGTTTCTAGTTGTCCCAACATAAAAAAGGTTCTTGTTGAAAAGTGGAAGGTTAGCCAACGTACTCAGCGTCGAGTAGGCTCAGTCATCTCCTACTTGTGCATGGACCTCTAG
Predicted protein sequences of Glyma13g28271
>Glyma13g28271.1   sequence type=predicted peptide   gene model=Glyma13g28271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGHDWINTLLPDELLIEIFRRLDSKSNRDASSLVCTRWLRLERLTRAAIRIGASGSPDLLIHLLAARFSNITTVHIDERLSVSIPAHLGRRRSSGNSSVKLHDVNDKHGSASDQSDLDSLCLSDSGLASLAEGFPKLEKLRLIWCSNVTSEGLSSLARKCTSLKSLDLQGCYVGDQGLAAIGQCCKQLEDLNLRFCEGLTDNGLVELALGVGNALKSLGVAACAKITDVSMEVVGSQCRSLETLSLDSEFIHNKGVLAVIKGCPHLKVLKLQCINLTDDTLNVAGTSCLSLELLALYSFQRFTDKGLCAIGNGCKKLKNLTLSDCYFLSDKGLEVIATGCKELTHLEVNGCHNIGTLGLESVGKSCQHLSELALLYCQRIGDAGLVQVGQGCKFLQALQLVDCSSIGDEAMCGIASGCRNLKKLHIRRCYEIGNKGIIAVGEKCKLLTDLSIRFCDRVGDRALIAIAEGCSLHYLNVSGCHLIGDAGVIAIARGCPQLCYLDVSVLQKLGDIAMAELGEHCPLLKEIVLSHCRQITDVGLAHLVKGCCTVLESCHMVYCSGVTSVGVATVVSSCPNIKKVLVEKWKVSQRTQRRVGSVISYLCMDL*






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