Report for Sequence Feature Glyma13g28240
Feature Type: gene_model
Chromosome: Gm13
Start: 31287422
stop: 31289491
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g28240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G15470 AT
Annotation by Michelle Graham. TAIR10: Bax inhibitor-1 family protein | chr4:8843661-8845505 FORWARD LENGTH=256
SoyBase E_val: 9.00E-115 ISS
GO:0006623 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0016197 GO-bp
Annotation by Michelle Graham. GO Biological Process: endosomal transport
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
KOG2322
KOG
N-methyl-D-aspartate receptor glutamate-binding subunit
JGI ISS
PTHR23291 Panther
BAX INHIBITOR-RELATED
JGI ISS
PTHR23291:SF9 Panther
GLUTAMATE-/ASPARTATE-BINDING PEPTIDE-RELATED
JGI ISS
PF01027 PFAM
Uncharacterised protein family UPF0005
JGI ISS
UniRef100_G7IKC7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane BAX inhibitor motif-containing protein n=1 Tax=Medicago truncatula RepID=G7IKC7_MEDTR
SoyBase E_val: 3.00E-131 ISS
UniRef100_I1M177 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M177_SOYBN
SoyBase E_val: 2.00E-175 ISS
Expression Patterns of Glyma13g28240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g28240
Paralog Evidence Comments
Glyma15g10820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g28240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g211300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g28240
Coding sequences of Glyma13g28240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g28240.1 sequence type=CDS gene model=Glyma13g28240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTGAGCCACAACAGCTATACACTCGCGCGAAGACCGAGGAATTCGACCTCGAATCAGGAGAAACCCTCTACCCAGGGCTGAGCGTCGGCGAGAACCAGCTCCGATGGGGTTTCATCCGCAAGGTCTACGGCATCCTCTCCGCGCAGATCGTCCTCACCACCCTCGTCTCCGTCACCACCGTTTTCTATACTCCAATCAATGACCTCCTCAAGGGCAATTCCACCCTCCTCCTCATCCTCCTCTTCCTTCCCTTCATCTTTTTGATTCCCCTGTTGAAGTACCAGCAGAAGCATCCTCATAATTACATCTTGCTTGCACTCTTCACCGTGTCGATCAGTTCCACCATCGGAGTCACCTGTGCCAACACCGACGGGAAAATTGTGCTTGAGGCTTTGATTTTGACCTCCGCTGTGGTTTCATCTCTTACTGGCTATGCCTTTTGGGCGTCCAAGAAGGGCAAGGATTTTAGCTTCCTTGGCCCAATATTGTTCACCTCCCTCATTACTCTCATCCTCACTGGCATGATGCAGATGTTCTTCCCTCTTGGACCTACTGCCCATGCTATCTATGGTGCAATTGGTGCTATGATATTCTCTGGCTACATTGTGTATGACACTGACAACCTGATCAAGCGTTTCACTTATGATGAGTACATTGGAGCCTCTGTTACTCTTTATCTTGACATACTCAACCTCTTCCTTTCCATCTTAAGGATCCTCAGGGAGGCAAATAATTAG
Predicted protein sequences of Glyma13g28240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g28240.1 sequence type=predicted peptide gene model=Glyma13g28240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFEPQQLYTRAKTEEFDLESGETLYPGLSVGENQLRWGFIRKVYGILSAQIVLTTLVSVTTVFYTPINDLLKGNSTLLLILLFLPFIFLIPLLKYQQKHPHNYILLALFTVSISSTIGVTCANTDGKIVLEALILTSAVVSSLTGYAFWASKKGKDFSFLGPILFTSLITLILTGMMQMFFPLGPTAHAIYGAIGAMIFSGYIVYDTDNLIKRFTYDEYIGASVTLYLDILNLFLSILRILREANN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
