Report for Sequence Feature Glyma13g28230
Feature Type: gene_model
Chromosome: Gm13
Start: 31279852
stop: 31283302
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g28230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06250 AT
Annotation by Michelle Graham. TAIR10: FAR1-related sequence 7 | chr3:1889771-1892065 REVERSE LENGTH=764
SoyBase E_val: 0 ISS
GO:0009639 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to red or far red light
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PF03101 PFAM
FAR1 DNA-binding domain
JGI ISS
PF04434 PFAM
SWIM zinc finger
JGI ISS
PF10551 PFAM
MULE transposase domain
JGI ISS
UniRef100_I1M176 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M176_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9M8J3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein FAR1-RELATED SEQUENCE 7 n=1 Tax=Arabidopsis thaliana RepID=FRS7_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g28230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g28230
Paralog Evidence Comments
Glyma15g10830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g28230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g211200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g28230
Coding sequences of Glyma13g28230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g28230.1 sequence type=CDS gene model=Glyma13g28230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTGTGAAGGATCATTTTGTTGGTACTGAACTGGCAATGAGTAATACTTGTGTGGAGGAGGGAATAGATTTCTCTTGTGACCCATACATAGGGTTAGAATTTGATACAGCTGATGAAGCACTTAAGTATTACACTTCATATGCCAATCGAACAGGGTTTAAAGTTCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCGAAGGAGGGACATCAACTTAGTTCAAGAACTGACTGTCCAGCATTCATAAGGGTACAACTAAATGGTTCTGGAAAGTGGGTGGTTGATCATTTTCATAAGGACCATAATCACCATCTTGAAATCAGTGGTGAAAATTGCACTCCAACATTGCAACCGAAGGGTGCTGGTGCTACAGTTATCAACTCTCTTACTGAGTTTCCTCGCAGGACGAGGAAGAAATTGCTTGAAGAAGCCAATGATGAGTCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAACTTGAAGGACAGTCCAGGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAACGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTCGATCACATCCCGCAGATTTGTTTGCTCTAAAGAGGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCATCGGGAAAGTGGATAGTGGACCGCCTCCGAAAAGATCATAACCATGATCTGGACTCTGAAAAGGTGGGCAGGGCAAAAAGTCTTCCTGCTTCTAATATTTTGGCTGAAGAGGTAGATACTGGATTGTTAAATGGTGACTTATTTAGAATAGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTATGGCATTCTTTTAGAGTATTTTCAATCAAGACAAGCAGAAGATACTGGATTCTTTTATGCCATGGAAGTTGACAATGGAAATTGCATGAACATATTTTGGGCAGATGGAAGATCTAGATATTCATGTAGTCACTTTGGTGATGTCCTTGTCTTAGACACATCATACCGAAAAACTGTCTATTTGGTACCATTTGCTACTTTTGTTGGAGTCAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCTGCCTCTGACAGTTATCGCAGATCAAGACATTGCAATCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCCATCATCGCTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTAATGGCTTTACAAAAGATTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAATGTCCTACTCAACAAATATGGATTGAAGGACGATGCTTGGCTAAAAGAAATGTATCAGAAGCGTGCATCTTGGGTTCCATTATATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAGAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCATGGAGTTCATTCCTCGGTATGAAAGGGGTCTCGAGCGACGCCGTGAAGAAGAAAGAAAAGAGGATTTTAACACTTCTAATTTTCAACCCATTTTGCAAACTAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTACACTCTTACTGTTTTCAAAATATTTCAGAAAGAGCTTTTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTGCGTAGATGTGGAAATGATATGGAGAAGCATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTGCAATTAAGAGAAGTCCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCTGACATGGAATCATGGAGTAGCTCTCAGGAACTAAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCTTTGAAAAGTATAAACTTGCCTTTGAAATTTTGCGCGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA
Predicted protein sequences of Glyma13g28230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g28230.1 sequence type=predicted peptide gene model=Glyma13g28230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIVKDHFVGTELAMSNTCVEEGIDFSCDPYIGLEFDTADEALKYYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTDCPAFIRVQLNGSGKWVVDHFHKDHNHHLEISGENCTPTLQPKGAGATVINSLTEFPRRTRKKLLEEANDESSCPFGIIDFKRLRKEELEGQSRTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLDSEKVGRAKSLPASNILAEEVDTGLLNGDLFRIDNYPVPRGGRQNHIRSEWYGILLEYFQSRQAEDTGFFYAMEVDNGNCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQRAIAKVFPVTHHRFSLWQIKAKEQENMGLMGNGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLTVFKIFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEYEGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDMESWSSSQELKNLMLWSLRETASKYIDAGATSFEKYKLAFEILREGGRKLCWHR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
