Glyma13g28170 - SoyBase

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Report for Sequence Feature Glyma13g28170

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31228068
stop:	31235806
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14290	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr4:8225547-8230057 REVERSE LENGTH=558	SoyBase	E_val: 0	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG1552	KOG	Predicted alpha/beta hydrolase	JGI		ISS
PTHR12277	Panther	UNCHARACTERIZED	JGI		ISS
PTHR12277:SF12	Panther	OS03G0359000 PROTEIN (FRAGMENT)	JGI		ISS
PTHR12277:SF9	Panther	UNCHARACTERIZED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9RST1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RST1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C492	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C492 related cluster n=1 Tax=unknown RepID=UPI000233C492	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28170

Paralog	Evidence	Comments
Glyma15g10900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g210700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28170

Limit To All Plant Sequences

>Glyma13g28170.3   sequence type=transcript   gene model=Glyma13g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCATTCATGAAGTATAGGAGGACAGAGACAAAACAACCAAAATAGTGAACAATTTTTTGTCCTCCTAAACATATAAAATAACGACTTTATGAGCATTCAAAAGTGTAGAAATTTTCTCTCCTGTATTTTCCCCTGCTTATGTAATAACATTATTTTTTTCTTTAATAGATCTTTAGTGGGGAAAAAATCCGAATCAGATGCAAGACTTTACAGAAAAAAAACTATTTGGGGGAAATTTTACCATATTGAATTTCTTTTGGTTTTTTGCACTTTCATATTCTTCATTCTATTCATTCATTATTTGTTGGCATTGCAGGTAGCAAAATCTTGTTTTGTTCCTGCTCTAGTAGGGCATGCCATTGATGATGATTTTATTCGTCCTCATCACTCAGATCGTATACTTGAGGCTTACATGGGGGACAAAAATATAATTAAATTTGAGGGAGATCACAACTCTTCGCGTCCTCAGTATTATTTTGATTCCGTAAACATATTTTTTCACAATGTTTTACAACCTCCTGAAGATGAGCTTGGGGAATCATTTTTTGACATTATGAATGATTACTTTGGTAAGGATGTTTGGAGATCTGTGCATGAATTTGACTTTGGCAATGAACCATCATTCCAAAACAAAGAAACATCAACAAGCAGTACTGTGGAAGACATTAAGCACGTCCGTTCAAAAAAACCAATGAGTAGGATGGAGGTTCCATCACATATTTCTTCAAAAGATGCACATCTCGACTGTGAGGCACAGAAATGTGATGATCTTTCCTCATCATCTTCTACAATGATTAGTTTTGAATTATCAAATGGTCGTCTCTATAGTCCCCTCGTTCCAACCGATCTAGATGATGACCACTTTGTGGAATTTCAACTTGATGACTTTACAGGCTGTCCATCTAGTGCAAAGAAAGAACAAAAAATGTTCACGGAAGCAGTGATAGATTCATTGAAAGACCGGGAAATACGAATTCCAGAGGTAGAACAACCACCTGTTAGGAGTGCTAGTAGTACCATGTCTATAGAGCCATCGGATAAGAATGACTCACATGCTTCTAATTCACATGAGATTTCCAAACCTGTGGAGACAGAATCTTCTTTACTCAACCACAGTGATAAAACAATTTCCACTTCATCTGATGCATTGGAGCCCTTGAAAACTGAGTCAAATTCCATTTCAGTGATTCCAAGTCCTGTAACAAGTCTTTCATCAAGCAAAATACCATCATCACCACTACCACCATTGGACACTTCATCGGTCACCGAGTCTGGCGATACAGAAAGTGCTTCTACTGGTAATGATAGTTCTGCTAGCTTACAAAGTTCATCAGACACTGACATTTCACACAATACAAAAGCCACATTAACTGTTATTAAGAATCCAACAGGTCATGTCTTGAACGGCTTACTGCGACGTTGGGATTTCAAGTTTTTCAGAAACAGTCAGAATCGATAAGATTAGAGAGTCATGGCTTTTGTAACTACAAAATATACTACATTAGTTTGTAAAATGCCCCACAAAAGAAATAGGTTGCTTGTACTTAGGTTCTGTATCTTTAGATTATCATCTAGCATTCATCTTATATTCTTTCACTGTAAGAGAGAGTTGTTGTGTTTTTACCCCGTCGAACTAGAATTTCTGGAAGTCCCCATTATTTGGCCATGCTTATGCATGATTTATTGATTTTTTCCTTGAATGTTTTTTCATTTTTCTTATCGAAGATTGGTGTAATTGTATTCAACTACTGTGGGGGGGCTTTCACGTTCTTTTTGTTACGCCTGACT

Coding sequences of Glyma13g28170

Limit To All Plant Sequences

>Glyma13g28170.2   sequence type=CDS   gene model=Glyma13g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATGCAGAGCTGAATATGATCCAAAAAGTGATTTATTGGATCACGAGTTCATGCTAAAAGGGAAATGGTTTCAACGGAAGGACGTGGAGATAAAAAACAGCCGTGGGGATGTTCTTCAATGCAGCCATTACATGCCTATAGTCAGTCCTGATGGAAAGCCTCTGCCATGTGTGATATATTGCCATGGAAACAGTGGATGCAGGGTTGATGCCAGTGAAGCTGCTCTAATTTTACTTCCTTCAAATATTACAGTTTTTACTCTGGATTTCTCGGGATCAGGAATCTCTGGAGGAGAGCATGTCACTCTAGGTTGGAATGAAAAGGATGATCTGAGGGCAGTGGTCAACTATCTGCGGGCAGATGGAAATGTCTCTCTGATTGGCTTATGGGGACGCTCAATGGGTGCTGTGACTAGCCTTATGTATGGAGCTGAGGATCCTTCAATCGCAGGAATGGTTTTAGACAGTCCCTTCTCTGATTTGGTTGATTTAATGATGGAACTTGTAGATACATATAGAGTCCGTCTGCCAAAATTCACAGTGAAGTTTGCAATTCAATACATGCGAAAAACAATCCAGAAGAAAGCAAAATTTGACATAACAGACTTGAACACCGTTAAGGTAGCAAAATCTTGTTTTGTTCCTGCTCTAGTAGGGCATGCCATTGATGATGATTTTATTCGTCCTCATCACTCAGATCGTATACTTGAGGCTTACATGGGGGACAAAAATATAATTAAATTTGAGGGAGATCACAACTCTTCGCGTCCTCAGTATTATTTTGATTCCGTAAACATATTTTTTCACAATGTTTTACAACCTCCTGAAGATGAGCTTGGGGAATCATTTTTTGACATTATGAATGATTACTTTGGTAAGGATGTTTGGAGATCTGTGCATGAATTTGACTTTGGCAATGAACCATCATTCCAAAACAAAGAAACATCAACAAGCAGTACTGTGGAAGACATTAAGCACGTCCGTTCAAAAAAACCAATGAGTAGGATGGAGGTTCCATCACATATTTCTTCAAAAGATGCACATCTCGACTGTGAGGCACAGAAATGTGATGATCTTTCCTCATCATCTTCTACAATGATTAGTTTTGAATTATCAAATGGTCGTCTCTATAGTCCCCTCGTTCCAACCGATCTAGATGATGACCACTTTGTGGAATTTCAACTTGATGACTTTACAGGCTGTCCATCTAGTGCAAAGAAAGAACAAAAAATGTTCACGGAAGCAGTGATAGATTCATTGAAAGACCGGGAAATACGAATTCCAGAGGTAGAACAACCACCTGTTAGGAGTGCTAGTAGTACCATGTCTATAGAGCCATCGGATAAGAATGACTCACATGCTTCTAATTCACATGAGATTTCCAAACCTGTGGAGACAGAATCTTCTTTACTCAACCACAGTGATAAAACAATTTCCACTTCATCTGATGCATTGGAGCCCTTGAAAACTGAGTCAAATTCCATTTCAGTGATTCCAAGTCCTGTAACAAGTCTTTCATCAAGCAAAATACCATCATCACCACTACCACCATTGGACACTTCATCGGTCACCGAGTCTGGCGATACAGAAAGTGCTTCTACTGGTAATGATAGTTCTGCTAGCTTACAAAGTTCATCAGACACTGACATTTCACACAATACAAAAGCCACATTAACTGTTATTAAGAATCCAACAGGTCATGTCTTGAACGGCTTACTGCGACGTTGGGATTTCAAGTTTTTCAGAAACAGTCAGAATCGATAA

>Glyma13g28170.3   sequence type=CDS   gene model=Glyma13g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATTCAAAAGTGTAGAAATTTTCTCTCCTGTATTTTCCCCTGCTTATGTAATAACATTATTTTTTTCTTTAATAGATCTTTAGTGGGGAAAAAATCCGAATCAGATGCAAGACTTTACAGAAAAAAAACTATTTGGGGGAAATTTTACCATATTGAATTTCTTTTGGTTTTTTGCACTTTCATATTCTTCATTCTATTCATTCATTATTTGTTGGCATTGCAGGTAGCAAAATCTTGTTTTGTTCCTGCTCTAGTAGGGCATGCCATTGATGATGATTTTATTCGTCCTCATCACTCAGATCGTATACTTGAGGCTTACATGGGGGACAAAAATATAATTAAATTTGAGGGAGATCACAACTCTTCGCGTCCTCAGTATTATTTTGATTCCGTAAACATATTTTTTCACAATGTTTTACAACCTCCTGAAGATGAGCTTGGGGAATCATTTTTTGACATTATGAATGATTACTTTGGTAAGGATGTTTGGAGATCTGTGCATGAATTTGACTTTGGCAATGAACCATCATTCCAAAACAAAGAAACATCAACAAGCAGTACTGTGGAAGACATTAAGCACGTCCGTTCAAAAAAACCAATGAGTAGGATGGAGGTTCCATCACATATTTCTTCAAAAGATGCACATCTCGACTGTGAGGCACAGAAATGTGATGATCTTTCCTCATCATCTTCTACAATGATTAGTTTTGAATTATCAAATGGTCGTCTCTATAGTCCCCTCGTTCCAACCGATCTAGATGATGACCACTTTGTGGAATTTCAACTTGATGACTTTACAGGCTGTCCATCTAGTGCAAAGAAAGAACAAAAAATGTTCACGGAAGCAGTGATAGATTCATTGAAAGACCGGGAAATACGAATTCCAGAGGTAGAACAACCACCTGTTAGGAGTGCTAGTAGTACCATGTCTATAGAGCCATCGGATAAGAATGACTCACATGCTTCTAATTCACATGAGATTTCCAAACCTGTGGAGACAGAATCTTCTTTACTCAACCACAGTGATAAAACAATTTCCACTTCATCTGATGCATTGGAGCCCTTGAAAACTGAGTCAAATTCCATTTCAGTGATTCCAAGTCCTGTAACAAGTCTTTCATCAAGCAAAATACCATCATCACCACTACCACCATTGGACACTTCATCGGTCACCGAGTCTGGCGATACAGAAAGTGCTTCTACTGGTAATGATAGTTCTGCTAGCTTACAAAGTTCATCAGACACTGACATTTCACACAATACAAAAGCCACATTAACTGTTATTAAGAATCCAACAGGTCATGTCTTGAACGGCTTACTGCGACGTTGGGATTTCAAGTTTTTCAGAAACAGTCAGAATCGATAA

Predicted protein sequences of Glyma13g28170

Limit To All Plant Sequences

>Glyma13g28170.2   sequence type=predicted peptide   gene model=Glyma13g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LACRAEYDPKSDLLDHEFMLKGKWFQRKDVEIKNSRGDVLQCSHYMPIVSPDGKPLPCVIYCHGNSGCRVDASEAALILLPSNITVFTLDFSGSGISGGEHVTLGWNEKDDLRAVVNYLRADGNVSLIGLWGRSMGAVTSLMYGAEDPSIAGMVLDSPFSDLVDLMMELVDTYRVRLPKFTVKFAIQYMRKTIQKKAKFDITDLNTVKVAKSCFVPALVGHAIDDDFIRPHHSDRILEAYMGDKNIIKFEGDHNSSRPQYYFDSVNIFFHNVLQPPEDELGESFFDIMNDYFGKDVWRSVHEFDFGNEPSFQNKETSTSSTVEDIKHVRSKKPMSRMEVPSHISSKDAHLDCEAQKCDDLSSSSSTMISFELSNGRLYSPLVPTDLDDDHFVEFQLDDFTGCPSSAKKEQKMFTEAVIDSLKDREIRIPEVEQPPVRSASSTMSIEPSDKNDSHASNSHEISKPVETESSLLNHSDKTISTSSDALEPLKTESNSISVIPSPVTSLSSSKIPSSPLPPLDTSSVTESGDTESASTGNDSSASLQSSSDTDISHNTKATLTVIKNPTGHVLNGLLRRWDFKFFRNSQNR*

>Glyma13g28170.3   sequence type=predicted peptide   gene model=Glyma13g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIQKCRNFLSCIFPCLCNNIIFFFNRSLVGKKSESDARLYRKKTIWGKFYHIEFLLVFCTFIFFILFIHYLLALQVAKSCFVPALVGHAIDDDFIRPHHSDRILEAYMGDKNIIKFEGDHNSSRPQYYFDSVNIFFHNVLQPPEDELGESFFDIMNDYFGKDVWRSVHEFDFGNEPSFQNKETSTSSTVEDIKHVRSKKPMSRMEVPSHISSKDAHLDCEAQKCDDLSSSSSTMISFELSNGRLYSPLVPTDLDDDHFVEFQLDDFTGCPSSAKKEQKMFTEAVIDSLKDREIRIPEVEQPPVRSASSTMSIEPSDKNDSHASNSHEISKPVETESSLLNHSDKTISTSSDALEPLKTESNSISVIPSPVTSLSSSKIPSSPLPPLDTSSVTESGDTESASTGNDSSASLQSSSDTDISHNTKATLTVIKNPTGHVLNGLLRRWDFKFFRNSQNR*

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