Glyma13g28130 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g28130): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g28130): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g28130

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31207900
stop:	31211263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g28130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06200	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:1877678-1878526 FORWARD LENGTH=282	SoyBase	E_val: 9.00E-110	ISS
GO:0006163	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide metabolic process	SoyBase	N/A	ISS
GO:0004385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: guanylate kinase activity	SoyBase	N/A	ISS
KOG0707	KOG	Guanylate kinase	JGI		ISS
PTHR23117	Panther	GUANYLATE KINASE	JGI		ISS
PTHR23117:SF1	Panther	GUANYLATE KINASE	JGI		ISS
PF00625	PFAM	Guanylate kinase	JGI		ISS
UniRef100_B9RSS9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Guanylate kinase, putative n=1 Tax=Ricinus communis RepID=B9RSS9_RICCO	SoyBase	E_val: 4.00E-119	ISS
UniRef100_I1M165	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M165_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g28130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g28130 not represented in the dataset	Glyma13g28130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g28130

Paralog	Evidence	Comments
Glyma15g10930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g28130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g210400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g28130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g28130

Limit To All Plant Sequences

>Glyma13g28130.3   sequence type=transcript   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAGTTAGTACGCCAGAATAGCGTTCTGAGTATAAATATCAATCTGTAGAAAGTATAGTCTTAATTATATTTTTTTTACTAAACCTGTTCTCATTTCATCAATCTATCTCAATTCTCATGTGGACGAGCAGTAGTATTTACAGCGAGTGTTCCATGCTCCGCAGGCTCCTCTGCACTTCTCTTCCCCGTCTTCCACTAAAACCACAATCTTCCTCCTTAACCATTCTCAACTCCTCACTCACCCAAAATCAAAAACAAAAACAGAAACCCTTATCTTCCCACACCATCAAATCCTTCTCCACTTCCAAAATGGGGGACGCGCCAAGACCCTTATCCGTTCCAATCCCCACTTTGGAAAAAGCAGAACGCTCCGACCTTCTCCGCGCCCTAGAAGCTTCCATGGGTTCCCCTTTCAGCTCGGAGCCTCTCTCCCCAAACCCTAACTCTCTCATCATCGTCATCAGCGGTCCCAGCGGCGTCGGCAAGGACGCCCTCATCGCGCGCCTCCGCGACAACTCCCGCCTCGCCCTCCACTTCGTCGTCACCGTCACCACCCGCCCCCGCCGCCCCGCCGAGGTCGACGGGAAAGACTACATCTTCGTATCCAAGGAAGAGTTTCTCGGGATGGTGGAGCGGGAGGAGCTGCTGGAGTATGCACTGGTCTACGGTGACTACAAGGGGGTCCCGAAGCAGCAGATTCGGGAGTGTCTCGCGAAGGGCTGCGACGTCGTTCTGAGGGTGGATATTCAGGGGGCTGCCACGCTGAAGAAGGTGCTCGGGAAGTCGGCGGTGTTTGTGTTTGTGGCGGCGGAGAGCGAGATGGCGTTGGTAGAGAGGCTCGTGGACCGGAAGACGGAGACCGTGGAGTCGTTGTTGGTGAGGATTGGTACTGCCAGGGAGGAGATGAAGCATGTTAAGAATTTTGATTATGTTGTGGTCAATGCTAAAGGGAAGCTTGATAATGCGGTCAAGTTGATGGAGTCTATTATTGATGCTGAGAAAGCTAGGGTTTCTCAGAGGACTCCTCTTTTGTAACAGACATGCACATGGTTTTATGATGGATGATAAACTGAGTTGGTGATTTTTACTTGTGAGCTTTGCTTGCCTCTGACGAGCTTGATGCTCATTTCCTACAACTGGTGTCATGTCATCATGGGAAGACATGTTGGGGGTTATGCTTGTGGTGATTCTTCCAATACTGCCTTAAATGAAGTACAAGTTCTTGGTGAATAGAAATTCTAATTACAATGTCTAATATCATTTGTTTATTTTATTCGGTGATCTGGTTTGAAATAGTTATCTAGGAAGCATATTGAATTTAGTGGATGAAACAGTGAACTGAATTGACACATATAGCCTTGATACCTGGTGTAATCCTTCTTATGAACTGATTCAAAAAGCCAGTGGCTCAAACTTAATCACAATAGGTTTTTATGCATATATACTGGGTTCTACTTTTCCTTTCTCTCTCCTCTCATTCACTCTTTGGTTAAACTGCAATATTTAGATATGCTTGAAGAACAGATAGGAATGAATCAATTTTTATACTTGTTCAGTTGTTCTAATTCAATAAAGAAGGTGGAAAATAAGGTTATAAATTATTTCCATCTTTTCTTTGTATATT

>Glyma13g28130.4   sequence type=transcript   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTTTTACTAAACCTGTTCTCATTTCATCAATCTATCTCAATTCTCATGTGGACGAGCAGTAGTATTTACAGCGAGTGTTCCATGCTCCGCAGGCTCCTCTGCACTTCTCTTCCCCGTCTTCCACTAAAACCACAATCTTCCTCCTTAACCATTCTCAACTCCTCACTCACCCAAAATCAAAAACAAAAACAGAAACCCTTATCTTCCCACACCATCAAATCCTTCTCCACTTCCAAAATGGGGGACGCGCCAAGACCCTTATCCGTTCCAATCCCCACTTTGGAAAAAGCAGAACGCTCCGACCTTCTCCGCGCCCTAGAAGCTTCCATGGGTTCCCCTTTCAGCTCGGAGCCTCTCTCCCCAAACCCTAACTCTCTCATCATCGTCATCAGCGGTCCCAGCGGCGTCGGCAAGGACGCCCTCATCGCGCGCCTCCGCGACAACTCCCGCCTCGCCCTCCACTTCGTCGTCACCGTCACCACCCGCCCCCGCCGCCCCGCCGAGGTCGACGGGAAAGACTACATCTTCGTATCCAAGGAAGAGTTTCTCGGGATGGTGGAGCGGGAGGAGCTGCTGGAGTATGCACTGGTCTACGGTGACTACAAGGGGGTCCCGAAGCAGCAGATTCGGGAGTGTCTCGCGAAGGGCTGCGACGTCGTTCTGAGGGTGGATATTCAGGGGGCTGCCACGCTGAAGAAGGTGCTCGGGAAGTCGGCGGTGTTTGTGTTTGTGGCGGCGGAGAGCGAGATGGCGTTGGTAGAGAGGCTCGTGGACCGGAAGACGGAGACCGTGGAGTCGTTGTTGGTGAGGATTGGTACTGCCAGGGAGGAGATGAAGCATGTTAAGAATTTTGATTATGTTGTGGTCAATGCTAAAGGGAAGCTTGATAATGCGGTCAAGTTGATGGAGTCTATTATTGATGCTGAGAAAGCTAGGGTTTCTCAGAGGACTCCTCTTTTGTAACAGACATGCACATGGATTGGTGTTTCTGAGGAAATGGCAGCTGCCCCCCCATTGACAATGAATTGAATCAAAGGATATATTCAAACCAATGTTTATTATGTTCTAAGTTCTCCGCAAAACTCAAAATATCTCAAGTTTTATGATGGATGATAAACTGAGTTGGTGATTTTTACTTGTGAGCTTTGCTTGCCTCTGACGAGCTTGATGCTCATTTCCTACAACTGGTGTCATGTCATCATGGGAAGACATGTTGGGGGTTATGCTTGTGGTGATTCTTCCAATACTGCCTTAAATGAAGTACAAGTTCTTGGTGAATAGAAATTCTAATTACAATGTCTAATATCATTTGTTTATTTTATTCGGTGATCTGGTTTGAAATAGTTATCTAGGAAGCATATTGAATTTAGTGGATGAAACAGTGAACTGAATTGACACATATAGCCTTGATACCTGGTGTAATCCTTCTTATGAACTGATTCAAAAAGCCAGTGGCTCAAACTTAATCACAATAGGTTTTTATGCATATATACTGGGTTCTACTTTTCCTTTCTCTCTCCTCTCATTCACTCTTTGGTTAAACTGCAATATTTAGATATGCTTGAAGAACAGATAGGAATGAATCAATTTTTATACTTGTTCAGTTGTTCTAATTCAATAAAGAAGGTGGAAAATAAGGTTATAAATTATTTCCATCTTTTCTTTGTATATT

Coding sequences of Glyma13g28130

Limit To All Plant Sequences

>Glyma13g28130.2   sequence type=CDS   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACGAGCAGTAGTATTTACAGCGAGTGTTCCATGCTCCGCAGGCTCCTCTGCACTTCTCTTCCCCGTCTTCCACTAAAACCACAATCTTCCTCCTTAACCATTCTCAACTCCTCACTCACCCAAAATCAAAAACAAAAACAGAAACCCTTATCTTCCCACACCATCAAATCCTTCTCCACTTCCAAAATGGGGGACGCGCCAAGACCCTTATCCGTTCCAATCCCCACTTTGGAAAAAGCAGAACGCTCCGACCTTCTCCGCGCCCTAGAAGCTTCCATGGGTTCCCCTTTCAGCTCGGAGCCTCTCTCCCCAAACCCTAACTCTCTCATCATCGTCATCAGCGGTCCCAGCGGCGTCGGCAAGGACGCCCTCATCGCGCGCCTCCGCGACAACTCCCGCCTCGCCCTCCACTTCGTCGTCACCGTCACCACCCGCCCCCGCCGCCCCGCCGAGGTCGACGGGAAAGACTACATCTTCGTATCCAAGGAAGAGTTTCTCGGGATGGTGGAGCGGGAGGAGCTGCTGGAGTATGCACTGGTCTACGGTGACTACAAGGGGGTCCCGAAGCAGCAGATTCGGGAGTGTCTCGCGAAGGGCTGCGACGTCGTTCTGAGGGTGGATATTCAGGGGGCTGCCACGCTGAAGAAGGTGCTCGGGAAGTCGGCGGTGTTTGTGTTTGTGGCGGCGGAGAGCGAGATGGCGTTGGTAGAGAGGCTCGTGGACCGGAAGACGGAGACCGTGGAGTCGTTGTTGGTGAGGATTGGTACTGCCAGGGAGGAGATGAAGCATGTTAAGAATTTTGATTATGTTGTGGTCAATGCTAAAGGGAAGCTTGATAATGCGGTCAAGTTGATGGAGTCTATTATTGATGCTGAGAAAGCTAGGGTTTCTCAGAGGACTCCTCTTTTGTAA

>Glyma13g28130.3   sequence type=CDS   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACGAGCAGTAGTATTTACAGCGAGTGTTCCATGCTCCGCAGGCTCCTCTGCACTTCTCTTCCCCGTCTTCCACTAAAACCACAATCTTCCTCCTTAACCATTCTCAACTCCTCACTCACCCAAAATCAAAAACAAAAACAGAAACCCTTATCTTCCCACACCATCAAATCCTTCTCCACTTCCAAAATGGGGGACGCGCCAAGACCCTTATCCGTTCCAATCCCCACTTTGGAAAAAGCAGAACGCTCCGACCTTCTCCGCGCCCTAGAAGCTTCCATGGGTTCCCCTTTCAGCTCGGAGCCTCTCTCCCCAAACCCTAACTCTCTCATCATCGTCATCAGCGGTCCCAGCGGCGTCGGCAAGGACGCCCTCATCGCGCGCCTCCGCGACAACTCCCGCCTCGCCCTCCACTTCGTCGTCACCGTCACCACCCGCCCCCGCCGCCCCGCCGAGGTCGACGGGAAAGACTACATCTTCGTATCCAAGGAAGAGTTTCTCGGGATGGTGGAGCGGGAGGAGCTGCTGGAGTATGCACTGGTCTACGGTGACTACAAGGGGGTCCCGAAGCAGCAGATTCGGGAGTGTCTCGCGAAGGGCTGCGACGTCGTTCTGAGGGTGGATATTCAGGGGGCTGCCACGCTGAAGAAGGTGCTCGGGAAGTCGGCGGTGTTTGTGTTTGTGGCGGCGGAGAGCGAGATGGCGTTGGTAGAGAGGCTCGTGGACCGGAAGACGGAGACCGTGGAGTCGTTGTTGGTGAGGATTGGTACTGCCAGGGAGGAGATGAAGCATGTTAAGAATTTTGATTATGTTGTGGTCAATGCTAAAGGGAAGCTTGATAATGCGGTCAAGTTGATGGAGTCTATTATTGATGCTGAGAAAGCTAGGGTTTCTCAGAGGACTCCTCTTTTGTAA

>Glyma13g28130.4   sequence type=CDS   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACGAGCAGTAGTATTTACAGCGAGTGTTCCATGCTCCGCAGGCTCCTCTGCACTTCTCTTCCCCGTCTTCCACTAAAACCACAATCTTCCTCCTTAACCATTCTCAACTCCTCACTCACCCAAAATCAAAAACAAAAACAGAAACCCTTATCTTCCCACACCATCAAATCCTTCTCCACTTCCAAAATGGGGGACGCGCCAAGACCCTTATCCGTTCCAATCCCCACTTTGGAAAAAGCAGAACGCTCCGACCTTCTCCGCGCCCTAGAAGCTTCCATGGGTTCCCCTTTCAGCTCGGAGCCTCTCTCCCCAAACCCTAACTCTCTCATCATCGTCATCAGCGGTCCCAGCGGCGTCGGCAAGGACGCCCTCATCGCGCGCCTCCGCGACAACTCCCGCCTCGCCCTCCACTTCGTCGTCACCGTCACCACCCGCCCCCGCCGCCCCGCCGAGGTCGACGGGAAAGACTACATCTTCGTATCCAAGGAAGAGTTTCTCGGGATGGTGGAGCGGGAGGAGCTGCTGGAGTATGCACTGGTCTACGGTGACTACAAGGGGGTCCCGAAGCAGCAGATTCGGGAGTGTCTCGCGAAGGGCTGCGACGTCGTTCTGAGGGTGGATATTCAGGGGGCTGCCACGCTGAAGAAGGTGCTCGGGAAGTCGGCGGTGTTTGTGTTTGTGGCGGCGGAGAGCGAGATGGCGTTGGTAGAGAGGCTCGTGGACCGGAAGACGGAGACCGTGGAGTCGTTGTTGGTGAGGATTGGTACTGCCAGGGAGGAGATGAAGCATGTTAAGAATTTTGATTATGTTGTGGTCAATGCTAAAGGGAAGCTTGATAATGCGGTCAAGTTGATGGAGTCTATTATTGATGCTGAGAAAGCTAGGGTTTCTCAGAGGACTCCTCTTTTGTAA

Predicted protein sequences of Glyma13g28130

Limit To All Plant Sequences

>Glyma13g28130.2   sequence type=predicted peptide   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTSSSIYSECSMLRRLLCTSLPRLPLKPQSSSLTILNSSLTQNQKQKQKPLSSHTIKSFSTSKMGDAPRPLSVPIPTLEKAERSDLLRALEASMGSPFSSEPLSPNPNSLIIVISGPSGVGKDALIARLRDNSRLALHFVVTVTTRPRRPAEVDGKDYIFVSKEEFLGMVEREELLEYALVYGDYKGVPKQQIRECLAKGCDVVLRVDIQGAATLKKVLGKSAVFVFVAAESEMALVERLVDRKTETVESLLVRIGTAREEMKHVKNFDYVVVNAKGKLDNAVKLMESIIDAEKARVSQRTPLL*

>Glyma13g28130.3   sequence type=predicted peptide   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTSSSIYSECSMLRRLLCTSLPRLPLKPQSSSLTILNSSLTQNQKQKQKPLSSHTIKSFSTSKMGDAPRPLSVPIPTLEKAERSDLLRALEASMGSPFSSEPLSPNPNSLIIVISGPSGVGKDALIARLRDNSRLALHFVVTVTTRPRRPAEVDGKDYIFVSKEEFLGMVEREELLEYALVYGDYKGVPKQQIRECLAKGCDVVLRVDIQGAATLKKVLGKSAVFVFVAAESEMALVERLVDRKTETVESLLVRIGTAREEMKHVKNFDYVVVNAKGKLDNAVKLMESIIDAEKARVSQRTPLL*

>Glyma13g28130.4   sequence type=predicted peptide   gene model=Glyma13g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTSSSIYSECSMLRRLLCTSLPRLPLKPQSSSLTILNSSLTQNQKQKQKPLSSHTIKSFSTSKMGDAPRPLSVPIPTLEKAERSDLLRALEASMGSPFSSEPLSPNPNSLIIVISGPSGVGKDALIARLRDNSRLALHFVVTVTTRPRRPAEVDGKDYIFVSKEEFLGMVEREELLEYALVYGDYKGVPKQQIRECLAKGCDVVLRVDIQGAATLKKVLGKSAVFVFVAAESEMALVERLVDRKTETVESLLVRIGTAREEMKHVKNFDYVVVNAKGKLDNAVKLMESIIDAEKARVSQRTPLL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain