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Report for Sequence Feature Glyma13g27980

Feature Type:gene_model
Chromosome:Gm13
Start:31089358
stop:31089732
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g27980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47550AT Annotation by Michelle Graham. TAIR10: Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122 SoyBaseE_val: 6.00E-19ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0004869GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase inhibitor activity SoyBaseN/AISS
PTHR11413Panther CYSTATIN FAMILY MEMBER JGI ISS
PTHR11413:SF28Panther SUBFAMILY NOT NAMED JGI ISS
PF00031PFAM Cystatin domain JGI ISS
UniRef100_I1M152UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M152_SOYBN SoyBaseE_val: 4.00E-85ISS
UniRef100_Q2HUA2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase inhibitor n=1 Tax=Medicago truncatula RepID=Q2HUA2_MEDTR SoyBaseE_val: 9.00E-24ISS

Expression Patterns of Glyma13g27980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g27980 not represented in the dataset
Glyma13g27980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g27980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g209000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g27980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g27980
>Glyma13g27980.1   sequence type=CDS   gene model=Glyma13g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTGGAGTGCCTTGTTGTTTTGGCCTTTGTTCTCTTTGCTTCTGCAGTTGCTAGGAAGGAAATTGACCCCAAAGGTTGGATCCCCATCGTTAAAATCAACGATCCTGCCCTAATAGAGATCGCTAAATTTTCTGTGACAGCATTCAATGAGTGGGCTGGTTTGACTTTCAAGTTGCAGAAGCTGCTAAAAGCCGAAATGCAGGGCCAAGTTGTAAATGGGATCTACTTTCGACTCATCGTCGCCGCCGGCGATGATCAGTCCTCCTCCAACAATTACCAAGCCATTGTCTGGAATTTGCCGTGGACGGAAAATTACATGAACCTTATTTCCTTTATCCCTGTTCATGATGCACCTCCTAGTTACTATTAA
Predicted protein sequences of Glyma13g27980
>Glyma13g27980.1   sequence type=predicted peptide   gene model=Glyma13g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLECLVVLAFVLFASAVARKEIDPKGWIPIVKINDPALIEIAKFSVTAFNEWAGLTFKLQKLLKAEMQGQVVNGIYFRLIVAAGDDQSSSNNYQAIVWNLPWTENYMNLISFIPVHDAPPSYY*






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