Glyma13g27950 - SoyBase

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Report for Sequence Feature Glyma13g27950

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31050534
stop:	31051813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06145	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:1860118-1860618 REVERSE LENGTH=166	SoyBase	E_val: 2.00E-47	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1M149	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M149_SOYBN	SoyBase	E_val: 2.00E-112	ISS

Expression Patterns of Glyma13g27950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27950

Paralog	Evidence	Comments
Glyma15g11080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g208700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g27950

Limit To All Plant Sequences

>Glyma13g27950.1   sequence type=CDS   gene model=Glyma13g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAAGGAGTTAGAAACTCTCATGGGGAAAGTGAGAGGTTTGAGCCTTCTATCTCTTGGTGGTTGCTTCGATGGCTGCTATGACCACACTCAAGCCTATGGATTAGGGACAAGGATCTGGAACTTCAGTGATCGACCAGTGGAGCTGCAGATAAGGGTGGGATCAATACTGAAGAAGGTTCACACTTTGAAGCCAGGGTCATGTAAGAGGCTGAGAAGTAAACGCATATACAAGGCATATATGCCTGGTAAGAGTGGCAATGATGGTGGGGGATTGAAGAGTTTGCTGTATTACTATGATGAAACTTGCCACCCTTATGTTTGGATTCATGACATAGGGGGTGGTTCCATGAGGATGGTTAAACAGCAGTATATTAGCCTTGAGAATTTGAGGGATTCTTCTGAGATCAGGATCTTGAGGGATCAGCAAAGAGGTTGCATTTCAGTTCTCAAGAGAACTAGGCCAGATTTCTGCTGA

Predicted protein sequences of Glyma13g27950

Limit To All Plant Sequences

>Glyma13g27950.1   sequence type=predicted peptide   gene model=Glyma13g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKELETLMGKVRGLSLLSLGGCFDGCYDHTQAYGLGTRIWNFSDRPVELQIRVGSILKKVHTLKPGSCKRLRSKRIYKAYMPGKSGNDGGGLKSLLYYYDETCHPYVWIHDIGGGSMRMVKQQYISLENLRDSSEIRILRDQQRGCISVLKRTRPDFC*

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