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Report for Sequence Feature Glyma13g27880

Feature Type:gene_model
Chromosome:Gm13
Start:30991879
stop:30993852
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g27880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06120AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:1846531-1848016 FORWARD LENGTH=202 SoyBaseE_val: 6.00E-86ISS
GO:0010374GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR11534Panther MYOGENIC FACTOR JGI ISS
PTHR11534:SF7Panther MYOGENIC FACTOR MYF-5 JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_B9RTU1UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTU1_RICCO SoyBaseE_val: 8.00E-84ISS
UniRef100_I1M142UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M142_SOYBN SoyBaseE_val: 2.00E-125ISS

Expression Patterns of Glyma13g27880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27880
ParalogEvidenceComments
Glyma15g11130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g208300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g27880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g27880
>Glyma13g27880.1   sequence type=CDS   gene model=Glyma13g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCACATAGCCGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCTTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCGTCAAGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTGAGCCCTAGCCCTGGCCCAAGTCCACGAACACTGCAGCCAACGTTTCATCAACTTGATAGCTCCTCCATGATTGGGACCAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTCCTGTTGCGGATGTTGAAGTGAAAATCTCGGGTTCAAACGTGATCTTGAAAGTCATTTGCCACAGAATTCCTGGTCAAGTTGCAAAGATCATAACTGTTTTGGAGAGTCTTTCCTTTGAAGTTCTTCATTTGAACATCAGCAGCATGGAGGAGACTGTCCTGTACCAATTTGTGGTCAAGATTGAGCTGGGTTGTCAACTAAGCCTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTCAGATGCTATAATTGCGCTGTGA
Predicted protein sequences of Glyma13g27880
>Glyma13g27880.1   sequence type=predicted peptide   gene model=Glyma13g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVRQALESQKRRKSLSPSPGPSPRTLQPTFHQLDSSSMIGTNSFKELGASCNSPVADVEVKISGSNVILKVICHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSDAIIAL*






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