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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23940 | AT | Annotation by Michelle Graham. TAIR10: dehydratase family | chr3:8648780-8652323 FORWARD LENGTH=608 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009082 | GO-bp | Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004160 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydroxy-acid dehydratase activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| KOG2448 | KOG | Dihydroxy-acid dehydratase | JGI | ISS | |
| PTHR21000 | Panther | DIHYDROXY-ACID DEHYDRATASE (DAD) | JGI | ISS | |
| PF00920 | PFAM | Dehydratase family | JGI | ISS | |
| UniRef100_D2DKF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydroxyacid dehydratase n=1 Tax=Glycine max RepID=D2DKF0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M137 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M137_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g27810 not represented in the dataset |
Glyma13g27810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g207900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g27810.1 sequence type=CDS gene model=Glyma13g27810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGTCCACACTCTTCAACCCCACCCATTCCCTTATCCCCACTTCACCACACTCTATCAGATCCAATTCTGGTCATGCTTCTCTCTCCGTTCGCGCCTCCATCGCCGTGGAAACCCCCACGGAGACGGTGAAGCTGAACAAGTACAGCTCCCGCATCACCGAGCCCAAATCGCAGGGCGCCTCCCAGGCCGTGCTCTACGGCGTCGGTCTCTCCGAGGACGACATGGCCAAGCCCCAGGTCGGCGTCTCCTCGGTCTGGTACGAGGGCAACACCTGCAACATGCACCTCCTCCACCTCTCCGAGGCCGTGCGTGACGGCGTTGCTGCTGCTGGCATGGTTCCCTTCCGCTTCAACACCGTTGGCGTCAGCGACGCCATCTCCATGGGCACCCGTGGCATGTGCTACAGCCTCCAGTCCAGGGACCTCATTGCCGACAGCATCGAGACCGTCATGGCAGCGCAGTGGTACGATGGCAATATTTCCATCCCCGGCTGTGACAAAAATATGCCAGGTACTATCATTGCCATGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAACCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATGTTATTCGCAACTCATGCCCTGGGGCTGGAGCCTGTGGTGGAATGTATACAGCCAATACCATGGCTTCTGCAATAGAAGCTATGGGAATGTCTCTTCCCTATAGCTCATCTACACCTGCTGAGGATCCACTAAAGTTGGATGAGTGTCGTTTAGCTGGGAAATATCTTCTTGAGTTACTGAAAATGGACTTGAAGCCCCGAGATATCATCACTCGTAAATCACTACGTAATGCAATGGTTATAGTTATGGCACTTGGTGGATCTACTAATGCTGTGTTACATTTAATTGCTATTGCCAAGTCTGTTGGCATTGATTTGACTCTTGATGATTTTCAGAAGGTTAGCGATGAGGTTCCTTTTATTGCAGATCTTAAGCCTAGTGGGAAATATGTCATGGAAGATGTTCACAAGATTGGAGGGACTCCTGCAGTTATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAAATATTATATGGAAACCTTGCACCACAGGGTTCCGTTGCTAAAATTACTGGAAAAGAAGGGCTGTACTTCTCTGGTCCTGCACTTGTCTTTGAAGGAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGCAGGTCTTGGAAAGGAAGTTGCATTATTGACTGATGGAAGATTTTCAGGAGGTTCACATGGATTTGTGGTTGGCCATATATGTCCTGAAGCACAGGAAGGTGGTCCAATTGGCTTGATTCAAAATGGAGACGTAATCAATGTTGACATCAAGAATAGGAGAATTGATGTTTTGGTATCAGATGAGGAGATGGAAGCACGCAGGAAAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
>Glyma13g27810.1 sequence type=predicted peptide gene model=Glyma13g27810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSTLFNPTHSLIPTSPHSIRSNSGHASLSVRASIAVETPTETVKLNKYSSRITEPKSQGASQAVLYGVGLSEDDMAKPQVGVSSVWYEGNTCNMHLLHLSEAVRDGVAAAGMVPFRFNTVGVSDAISMGTRGMCYSLQSRDLIADSIETVMAAQWYDGNISIPGCDKNMPGTIIAMGRLNRPSIMVYGGTIKPGHFEGNTFDIVSAFQCYGEYVSGSINDDQRQNVIRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSTPAEDPLKLDECRLAGKYLLELLKMDLKPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIAKSVGIDLTLDDFQKVSDEVPFIADLKPSGKYVMEDVHKIGGTPAVIRYLLEQGFLDGDCMTVTGKTLAENAELVPPLSNGQEIIRPVENPIKKTAHIQILYGNLAPQGSVAKITGKEGLYFSGPALVFEGEEAMIAAISEDPSSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIQNGDVINVDIKNRRIDVLVSDEEMEARRKKWTAPPYKANRGALYKYIKNVTPASSGCVTDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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