SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08970 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit C9 | chr1:2883144-2883839 FORWARD LENGTH=231 | SoyBase | E_val: 5.00E-49 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG1659 | KOG | Class 2 transcription repressor NC2, alpha subunit (DRAP1) | JGI | ISS | |
| PTHR10252 | Panther | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | JGI | ISS | |
| PTHR10252:SF6 | Panther | CCAAT-BINDING TRANSCRIPTION FACTOR | JGI | ISS | |
| PF00808 | PFAM | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | JGI | ISS | |
| UniRef100_E4MWL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-15-A06 n=1 Tax=Eutrema halophilum RepID=E4MWL0_THEHA | SoyBase | E_val: 7.00E-50 | ISS |
| UniRef100_I1M134 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M134_SOYBN | SoyBase | E_val: 1.00E-151 | ISS |
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Glyma13g27780 not represented in the dataset |
Glyma13g27780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g207600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g27780.3 sequence type=transcript gene model=Glyma13g27780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTACCACCTTCTTCTTCACCTCAATTTTCCCCTCTTTGGTTCAGAACTGAAATCTCAATCTGTTCAAAACAAATTAAACTTTAGTCTATAACAACAACGCTAAAATGGATCAAAACCAGCATGTTCAACCAGCACAAGAAGCATATGGCGAAAACCAATATCAATCTAACCCCGTGACGACACCTACCGTTCTTCCAACTCAGACATCTGATTCTTCTCTTTCATCATCCTACCCAAGACAGCACCCAAATGATCCCCAATTGGAAGCCATGTACGAGCTACGACAAGAACGCTTGCAACAACAACTCAACAACTTCTGGGCAAAACAGTGCCAGGAAATCCAGGAGGCCACTGATTTAAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATTATGAAGTCTGATGAGGATGTAAAGCTGGTATCAGCTGAGGCTCCGGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACTTTGAGGGCTTGGGCTAATGTTGAGGAGGACCAAAGGAAGATAATTAAGAAGCATGACATTGCATCTTCAATCTCAAGGGCAGATGTGTTTGATTTTCTTATTGATACTGTCCCCAGGCCGCTTGAAAATATATTGGATCAACAAGGGTTTGTAGGCCTACCAACAAGCACTGTTCCAACTCCATTGAATGATGCTTGCTATCATAATCCCCCTCCTCAGGCGCTTGTTCCGGGCAATCCATATGGTTCTCCAAGAATAGCTGTGGGAATGCCTATTCTTGATCAAAATCATCCTGGGCTGCAAATCCATCATTTTCTAACTCCAATGGAGCCCACCCCCACCCCCACCCCCAATCCCCAAAACCCTTCTCCTAGTTCGGATTGTTGA
>Glyma13g27780.2 sequence type=CDS gene model=Glyma13g27780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGTCCACGTCTATAACAACAACGCTAAAATGGATCAAAACCAGCATGTTCAACCAGCACAAGAAGCATATGGCGAAAACCAATATCAATCTAACCCCGTGACGACACCTACCGTTCTTCCAACTCAGACATCTGATTCTTCTCTTTCATCATCCTACCCAAGACAGCACCCAAATGATCCCCAATTGGAAGCCATGTACGAGCTACGACAAGAACGCTTGCAACAACAACTCAACAACTTCTGGGCAAAACAGTGCCAGGAAATCCAGGAGGCCACTGATTTAAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATTATGAAGTCTGATGAGGATGTAAAGCTGGTATCAGCTGAGGCTCCGGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACTTTGAGGGCTTGGGCTAATGTTGAGGAGGACCAAAGGAAGATAATTAAGAAGCATGACATTGCATCTTCAATCTCAAGGGCAGATGTGTTTGATTTTCTTATTGATACTGTCCCCAGGCCGCTTGAAAATATATTGGATCAACAAGGGTTTGTAGGCCTACCAACAAGCACTGTTCCAACTCCATTGAATGATGCTTGCTATCATAATCCCCCTCCTCAGGCGCTTGTTCCGGGCAATCCATATGGTTCTCCAAGAATAGCTGTGGGAATGCCTATTCTTGATCAAAATCATCCTGGGCTGCAAATCCATCATTTTCTAACTCCAATGGAGCCCACCCCCACCCCCACCCCCAATCCCCAAAACCCTTCTCCTAGTTCGGATTGTTGA >Glyma13g27780.3 sequence type=CDS gene model=Glyma13g27780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAAAACCAGCATGTTCAACCAGCACAAGAAGCATATGGCGAAAACCAATATCAATCTAACCCCGTGACGACACCTACCGTTCTTCCAACTCAGACATCTGATTCTTCTCTTTCATCATCCTACCCAAGACAGCACCCAAATGATCCCCAATTGGAAGCCATGTACGAGCTACGACAAGAACGCTTGCAACAACAACTCAACAACTTCTGGGCAAAACAGTGCCAGGAAATCCAGGAGGCCACTGATTTAAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATTATGAAGTCTGATGAGGATGTAAAGCTGGTATCAGCTGAGGCTCCGGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACTTTGAGGGCTTGGGCTAATGTTGAGGAGGACCAAAGGAAGATAATTAAGAAGCATGACATTGCATCTTCAATCTCAAGGGCAGATGTGTTTGATTTTCTTATTGATACTGTCCCCAGGCCGCTTGAAAATATATTGGATCAACAAGGGTTTGTAGGCCTACCAACAAGCACTGTTCCAACTCCATTGAATGATGCTTGCTATCATAATCCCCCTCCTCAGGCGCTTGTTCCGGGCAATCCATATGGTTCTCCAAGAATAGCTGTGGGAATGCCTATTCTTGATCAAAATCATCCTGGGCTGCAAATCCATCATTTTCTAACTCCAATGGAGCCCACCCCCACCCCCACCCCCAATCCCCAAAACCCTTCTCCTAGTTCGGATTGTTGA
>Glyma13g27780.2 sequence type=predicted peptide gene model=Glyma13g27780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQVHVYNNNAKMDQNQHVQPAQEAYGENQYQSNPVTTPTVLPTQTSDSSLSSSYPRQHPNDPQLEAMYELRQERLQQQLNNFWAKQCQEIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRADVFDFLIDTVPRPLENILDQQGFVGLPTSTVPTPLNDACYHNPPPQALVPGNPYGSPRIAVGMPILDQNHPGLQIHHFLTPMEPTPTPTPNPQNPSPSSDC* >Glyma13g27780.3 sequence type=predicted peptide gene model=Glyma13g27780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQNQHVQPAQEAYGENQYQSNPVTTPTVLPTQTSDSSLSSSYPRQHPNDPQLEAMYELRQERLQQQLNNFWAKQCQEIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRADVFDFLIDTVPRPLENILDQQGFVGLPTSTVPTPLNDACYHNPPPQALVPGNPYGSPRIAVGMPILDQNHPGLQIHHFLTPMEPTPTPTPNPQNPSPSSDC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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