Glyma13g27770 - SoyBase

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Report for Sequence Feature Glyma13g27770

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30889507
stop:	30892048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54830	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit C3 \| chr1:20451672-20452325 FORWARD LENGTH=217	SoyBase	E_val: 1.00E-46	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG1657	KOG	CCAAT-binding factor, subunit C (HAP5)	JGI		ISS
PTHR10252	Panther	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	JGI		ISS
PTHR10252:SF6	Panther	CCAAT-BINDING TRANSCRIPTION FACTOR	JGI		ISS
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI		ISS
UniRef100_I1M133	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M133_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2VY17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS interacting protein 2b n=1 Tax=Solanum lycopersicum RepID=Q2VY17_SOLLC	SoyBase	E_val: 1.00E-46	ISS

Expression Patterns of Glyma13g27770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g27770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g207500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g27770

Limit To All Plant Sequences

>Glyma13g27770.2   sequence type=transcript   gene model=Glyma13g27770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTTTCATCAGCACCTTCTTCACTTCAATTCCTCTCTGGTTCGGAACTGAAATCTCAAATTGTTCAAAACAAATTAAACTTTAGTCTAGCTATAACAAGAGTTAGAATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGAACAAATAATATCTACTTAGTGAAAACAATGGTAATTAAGGATACATAAGATCTTCAGCTTTAAGTGAGACCTCTATTTGTTTCTTTCTAATGTTATGTTATAGTCAATGTTGTGTTTCTAATTTGAATTGGATATCAATGTTTGAAACTGTTTTCTTTGCCAATATCTAGG

Coding sequences of Glyma13g27770

Limit To All Plant Sequences

>Glyma13g27770.1   sequence type=CDS   gene model=Glyma13g27770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGA

>Glyma13g27770.2   sequence type=CDS   gene model=Glyma13g27770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTTTCATCAGCACCTTCTTCACTTCAATTCCTCTCTGGTTCGGAACTGAAATCTCAAATTGTTCAAAACAAATTAAACTTTAGTCTAGCTATAACAAGAGTTAGAATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGA

Predicted protein sequences of Glyma13g27770

Limit To All Plant Sequences

>Glyma13g27770.1   sequence type=predicted peptide   gene model=Glyma13g27770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQNQHDRLAQEAQYQSNPMMAPTILPTQTYGHSLSSSYPRLHPYDPQAMYQLRQEPLQQQLTNFWAKKRQEIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTDVFDFLVDIVSGHNKIMEQQGFVGIPRIGTALTPTENVPYYQMPPHQSLVPGPPYGSSGMVVGMPVHYQNHPGLQTPTMGPTPNPQNSSRDSDS*

>Glyma13g27770.2   sequence type=predicted peptide   gene model=Glyma13g27770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LLSSAPSSLQFLSGSELKSQIVQNKLNFSLAITRVRMDQNQHDRLAQEAQYQSNPMMAPTILPTQTYGHSLSSSYPRLHPYDPQAMYQLRQEPLQQQLTNFWAKKRQEIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTDVFDFLVDIVSGHNKIMEQQGFVGIPRIGTALTPTENVPYYQMPPHQSLVPGPPYGSSGMVVGMPVHYQNHPGLQTPTMGPTPNPQNSSRDSDS*

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