Glyma13g27650 - SoyBase

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Report for Sequence Feature Glyma13g27650

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30805041
stop:	30810437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04880	AT	Annotation by Michelle Graham. TAIR10: adenosine/AMP deaminase family protein \| chr4:2465055-2467103 REVERSE LENGTH=355	SoyBase	E_val: 2.00E-176	ISS
GO:0006154	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenosine catabolic process	SoyBase	N/A	ISS
GO:0009168	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine ribonucleoside monophosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004000	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosine deaminase activity	SoyBase	N/A	ISS
GO:0019239	GO-mf	Annotation by Michelle Graham. GO Molecular Function: deaminase activity	SoyBase	N/A	ISS
KOG1097	KOG	Adenine deaminase/adenosine deaminase	JGI		ISS
PTHR11409	Panther	ADENOSINE DEAMINASE	JGI		ISS
PTHR11409:SF21	Panther	ADENOSINE DEAMINASE-LIKE PROTEIN	JGI		ISS
PF00962	PFAM	Adenosine/AMP deaminase	JGI		ISS
UniRef100_G7JI13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenosine deaminase-like protein n=1 Tax=Medicago truncatula RepID=G7JI13_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M119	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M119_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g27650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g27650 not represented in the dataset	Glyma13g27650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27650

Paralog	Evidence	Comments
Glyma15g11310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g206500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g27650

Limit To All Plant Sequences

>Glyma13g27650.6   sequence type=transcript   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCTATTAAAGTGGTGTCTCTCTGAGGCTTTGAAAAGCACCGTGCTCAGTTTGGTGAGGGTTTGAATCTCACCACTCTCCCTTCTGTTTGCAAAACTGCTCCTTCTGCCATCATCCGAGGATCAAAGAGAAAAACAAGAGATGGAGTGGTGTGTGTCAATGCCAAAGATTGAACTGCATGCTCACCTTAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGCCATTAATTTTTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCAGTGGAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTGCAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACTACTCCAAAGAGAAATGATTCTGTGGGAATGAGCAAACGCTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATTACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGCTATTGATGGACATGCGAGAAAAAGAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGACACTGTCAAGCTTGCACTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATACTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTTCGCCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTAAAGTCATCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTATACAACGCAAAACATCCTTTAGTCCTGTGTACCGATGACTCTGGTGTGTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGTATATATTCGCAGACAGCAAAATAAAGGAGGATTTAAGAAGAAATTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTGAATATCTGCATTTAGATATATTAATATTAGAGATTAGCTAACGATCATGCAGGGGATTGCCCCTTATCCTAGCTTGAAGTTGGCAATCGAGTCCTTCACGTGGAAAAAAGAATGTGTAAAGGGATAAAATAAGGGTGTAGGATTCACATTTGTTATGAGTATTTTTAATTCAAATCTGCAGCAATGTTGTCCTTTATTTTCTGATTTTGCACGTCACTCGAGGAGTTGATGAAAATTGTTCAATCAAGTGATTATTCTTCTAGGAGGTTTCGGTTGATGAGCCATACAGGATACGCCATTGTAAGGGTCAATGGTCACGTCATTGGATATATGCCGACCACAATCTTGGCTATTAATGCTGCAGTTACCACTTTCTTTTTTGGTGCCTTGCAATTTCCACTTTTAAATTTGACCATGACAATGAACATTTTTCCATTTTCCATTGTGCC

>Glyma13g27650.7   sequence type=transcript   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCTATTAAAGTGGTGTCTCTCTGAGGCTTTGAAAAGCACCGTGCTCAGTTTGGTGAGGGTTTGAATCTCACCACTCTCCCTTCTGTTTGCAAAACTGCTCCTTCTGCCATCATCCGAGGATAGAAAAACAAGAGATGGAGTGGTGTGTGTCAATGCCAAAGATTGAACTGCATGCTCACCTTAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGCCATTAATTTTTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCAGTGGAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTGCAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACTACTCCAAAGAGAAATGATTCTGTGGGAATGAGCAAACGCTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATTACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGCTATTGATGGACATGCGAGAAAAAGAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGACACTGTCAAGCTTGCACTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATACTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTTCGCCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTAAAGTCATCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTATACAACGCAAAACATCCTTTAGTCCTGTGTACCGATGACTCTGGTGTGTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGTATATATTCGCAGACAGCAAAATAAAGGAGGATTTAAGAAGAAATTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTGAATATCTGCATTTAGATATATTAATATTAGAGATTAGCTAACGATCATGCAGGGGATTGCCCCTTATCCTAGCTTGAAGTTGGCAATCGAGTCCTTCACGTGGAAAAAAGAATGTGTAAAGGGATAAAATAAGGGTGTAGGATTCACATTTGTTATGAGTATTTTTAATTCAAATCTGCAGCAATGTTGTCCTTTATTTTCTGATTTTGCACGTCACTCGAGGAGTTGATGAAAATTGTTCAATCAAGTGATTATTCTTCTAGGAGGTTTCGGTTGATGAGCCATACAGGATACGCCATTGTAAGGGTCAATGGTCACGTCATTGGATATATGCCGACCACAATCTTGGCTATTAATGCTGCAGTTACCACTTTCTTTTTTGGTGCCTTGCAATTTCCACTTTTAAATTTGACCATGACAATGAACATTTTTCCATTTTCCATTGTGCC

Coding sequences of Glyma13g27650

Limit To All Plant Sequences

>Glyma13g27650.3   sequence type=CDS   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGTGTGTGTCAATGCCAAAGATTGAACTGCATGCTCACCTTAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGCCATTAATTTTTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCAGTGGAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTGCAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACTACTCCAAAGAGAAATGATTCTGTGGGAATGAGCAAACGCTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATTACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGCTATTGATGGACATGCGAGAAAAAGAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGACACTGTCAAGCTTGCACTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATACTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTTCGCCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTAAAGTCATCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTATACAACGCAAAACATCCTTTAGTCCTGTGTACCGATGACTCTGGTGTGTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGTATATATTCGCAGACAGCAAAATAAAGGAGGATTTAAGAAGAAATTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTGA

>Glyma13g27650.6   sequence type=CDS   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGTGTGTGTCAATGCCAAAGATTGAACTGCATGCTCACCTTAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGCCATTAATTTTTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCAGTGGAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTGCAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACTACTCCAAAGAGAAATGATTCTGTGGGAATGAGCAAACGCTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATTACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGCTATTGATGGACATGCGAGAAAAAGAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGACACTGTCAAGCTTGCACTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATACTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTTCGCCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTAAAGTCATCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTATACAACGCAAAACATCCTTTAGTCCTGTGTACCGATGACTCTGGTGTGTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGTATATATTCGCAGACAGCAAAATAAAGGAGGATTTAAGAAGAAATTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTGA

>Glyma13g27650.7   sequence type=CDS   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGTGTGTGTCAATGCCAAAGATTGAACTGCATGCTCACCTTAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGCCATTAATTTTTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCAGTGGAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTGCAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACTACTCCAAAGAGAAATGATTCTGTGGGAATGAGCAAACGCTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATTACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGCTATTGATGGACATGCGAGAAAAAGAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGACACTGTCAAGCTTGCACTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATACTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTTCGCCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTAAAGTCATCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTATACAACGCAAAACATCCTTTAGTCCTGTGTACCGATGACTCTGGTGTGTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGTATATATTCGCAGACAGCAAAATAAAGGAGGATTTAAGAAGAAATTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTGA

Predicted protein sequences of Glyma13g27650

Limit To All Plant Sequences

>Glyma13g27650.3   sequence type=predicted peptide   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWCVSMPKIELHAHLNGSIRDSTLLELTKALIGKGAINFSEVEHIILKYNRSVEEVFKLFDLIHILTTDHNTVARITREVIEDFASENVVYLELRTTPKRNDSVGMSKRSYVEAVLKGLRSITSVDVDFIPHCEDSKTLFTPAPAIDGHARKRIFVRLLLSIDRRETTEAAMDTVKLALEMRPYGVVGIDLSGNPSIGDWTTYLPALKFAREQGLYVTLHCGELPNSKEIKNMLDFRPQRIGHACFFEDEHWRQLKSSNIPVEICLTSNVRTMTVPSIDVHHFAHLYNAKHPLVLCTDDSGVFSTCLSKEYKIAADSFGLGRREMFELSRNAVEYIFADSKIKEDLRRNFNSVAKKYGSVTTVSS*

>Glyma13g27650.6   sequence type=predicted peptide   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWCVSMPKIELHAHLNGSIRDSTLLELTKALIGKGAINFSEVEHIILKYNRSVEEVFKLFDLIHILTTDHNTVARITREVIEDFASENVVYLELRTTPKRNDSVGMSKRSYVEAVLKGLRSITSVDVDFIPHCEDSKTLFTPAPAIDGHARKRIFVRLLLSIDRRETTEAAMDTVKLALEMRPYGVVGIDLSGNPSIGDWTTYLPALKFAREQGLYVTLHCGELPNSKEIKNMLDFRPQRIGHACFFEDEHWRQLKSSNIPVEICLTSNVRTMTVPSIDVHHFAHLYNAKHPLVLCTDDSGVFSTCLSKEYKIAADSFGLGRREMFELSRNAVEYIFADSKIKEDLRRNFNSVAKKYGSVTTVSS*

>Glyma13g27650.7   sequence type=predicted peptide   gene model=Glyma13g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWCVSMPKIELHAHLNGSIRDSTLLELTKALIGKGAINFSEVEHIILKYNRSVEEVFKLFDLIHILTTDHNTVARITREVIEDFASENVVYLELRTTPKRNDSVGMSKRSYVEAVLKGLRSITSVDVDFIPHCEDSKTLFTPAPAIDGHARKRIFVRLLLSIDRRETTEAAMDTVKLALEMRPYGVVGIDLSGNPSIGDWTTYLPALKFAREQGLYVTLHCGELPNSKEIKNMLDFRPQRIGHACFFEDEHWRQLKSSNIPVEICLTSNVRTMTVPSIDVHHFAHLYNAKHPLVLCTDDSGVFSTCLSKEYKIAADSFGLGRREMFELSRNAVEYIFADSKIKEDLRRNFNSVAKKYGSVTTVSS*

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