Glyma13g27600 - SoyBase

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Report for Sequence Feature Glyma13g27600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30785784
stop:	30788976
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04860	AT	Annotation by Michelle Graham. TAIR10: DERLIN-2.2 \| chr4:2460135-2461378 FORWARD LENGTH=244	SoyBase	E_val: 1.00E-165	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
KOG0858	KOG	Predicted membrane protein	JGI		ISS
PTHR11009	Panther	DER1-LIKE PROTEIN, DERLIN	JGI		ISS
PF04511	PFAM	Der1-like family	JGI		ISS
UniRef100_B9RXN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Derlin-2, putative n=1 Tax=Ricinus communis RepID=B9RXN5_RICCO	SoyBase	E_val: 7.00E-170	ISS
UniRef100_C6TC78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TC78_SOYBN	SoyBase	E_val: 2.00E-178	ISS

Expression Patterns of Glyma13g27600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27600

Paralog	Evidence	Comments
Glyma15g11350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g205900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g27600

Limit To All Plant Sequences

>Glyma13g27600.1   sequence type=CDS   gene model=Glyma13g27600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCCGTCATCACGCGCTCCTATCTCACCGCTGCTGTTGTCACCACTATCGGATGCTCCCTTGATATAATTTCTCCGTATCATTTGTACTTGAACCCTATATTGGTGGTGAAGCAATATCAGTTTTGGCGCCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCTCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGTGCCACTGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGGGTTCTCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGGGAATGATTGCTGGCCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACAGGTCGTAGGCCACTAAAAACACCATCATTCATCAAAGCACTATTTGCAGATGACCCAGTTGTTGTTGCACGGCCTGCTAATGTCAGGTTTGCTCCCCCACCTGCTGAAGAACTTCACCAAGATTGA

Predicted protein sequences of Glyma13g27600

Limit To All Plant Sequences

>Glyma13g27600.1   sequence type=predicted peptide   gene model=Glyma13g27600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPILVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEELHQD*

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