Glyma13g27510 - SoyBase

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Report for Sequence Feature Glyma13g27510

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30692128
stop:	30693533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11700	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF584 \| chr1:3945852-3946457 FORWARD LENGTH=201	SoyBase	E_val: 7.00E-48	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04520	PFAM	Protein of unknown function, DUF584	JGI		ISS
UniRef100_E4MY81	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-44-P14 n=1 Tax=Eutrema halophilum RepID=E4MY81_THEHA	SoyBase	E_val: 1.00E-37	ISS
UniRef100_I1M104	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M104_SOYBN	SoyBase	E_val: 3.00E-139	ISS

Expression Patterns of Glyma13g27510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27510

Paralog	Evidence	Comments
Glyma15g11470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g205000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g27510

Limit To All Plant Sequences

>Glyma13g27510.4   sequence type=transcript   gene model=Glyma13g27510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAAATTCAGACAAAATGAACCCGAAACTCAAATTCAAATGAAATTGCAAAGGTTATATATACAGAGGAAGTGTGGCACCTATGTGCCCCCTAGCTCAAGCACAAGAGCAATGGACTCGTAAGAGTAGTAACTAAGAAAATAAAGGTTTCTAATTTATTTCGTTCAATTCTCCGGCGGCACCGCAACCGATTCCGCCACCGCATATGGCAAAAGGTCGAAAACTAACGACCAGCCGGAGCGAGCGCTTCTTGGGAACCTATGCTTACAGCCAAGGCTCCGCCGCCGTGAACCCGTCGGAGCTTCGGGAAGAGGATGTATGGGGCGCCGGAGATGACGCCGGCGAACGCGAGTGGGATCCACACTTCGCCGCCATGAGCAACGGCGGCGGAAGCCGGCGCCGGATTCCGCGTGACACGGATGTGCACCGGCGCGTGGGTGGGCTGTCTCTGGCTTTTGAAGCTCCGGCGAGTGGCGCGTCGCCGAGGATCGTGCACCAGTTTCGCGCGCGTGAAGAGATGGCGTCGACGCCGCGAGTGCGGCACATGGCGACGTCGGCGCCGATGAACGTGCCGGACTGGAGCAAGATACTCCGAGTCGACTCGGTCGATTCGCTGAACGACGATTACAACGACGAAGACGAATCGGAGATGGTGCCACCGCATGAGTATTTGGCGCGTAGCCAGACGATGGTGGCTAACTCGGTGTTTGAAGGAGTGGGCCGCACGTTGAAGGGCCGAGACTTGAGCCGGGTTCGTGATGCCGTGTGGAGCCAGACCGGGTTCGACGGTTAACACCGGGCTCAGGTGGCAAGTGATGGTTAGTTGAAGACGATTGTTTTGGTTTTGTTCTGGGCGATGATTCGGCTGAGTGGACTCGGCCGAAGAGAGTCCAACTCAGTGGCCAGTGAGCCTGAGCCGCAATAATTGATTAGCATGTAATTTAAATGATAATTTGTGAATTATGATTAAGATATTTTCCGGCCACGGCCACTTTATTTTCAGTTTTGGATAATTGGGTCTTCTAATTTCTGTTTATTTTATTGTCAAAGAAAAAGAAAAAGGAATTTTTACGAATA

Coding sequences of Glyma13g27510

Limit To All Plant Sequences

>Glyma13g27510.3   sequence type=CDS   gene model=Glyma13g27510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGGTCGAAAACTAACGACCAGCCGGAGCGAGCGCTTCTTGGGAACCTATGCTTACAGCCAAGGCTCCGCCGCCGTGAACCCGTCGGAGCTTCGGGAAGAGGATGTATGGGGCGCCGGAGATGACGCCGGCGAACGCGAGTGGGATCCACACTTCGCCGCCATGAGCAACGGCGGCGGAAGCCGGCGCCGGATTCCGCGTGACACGGATGTGCACCGGCGCGTGGGTGGGCTGTCTCTGGCTTTTGAAGCTCCGGCGAGTGGCGCGTCGCCGAGGATCGTGCACCAGTTTCGCGCGCGTGAAGAGATGGCGTCGACGCCGCGAGTGCGGCACATGGCGACGTCGGCGCCGATGAACGTGCCGGACTGGAGCAAGATACTCCGAGTCGACTCGGTCGATTCGCTGAACGACGATTACAACGACGAAGACGAATCGGAGATGGTGCCACCGCATGAGTATTTGGCGCGTAGCCAGACGATGGTGGCTAACTCGGTGTTTGAAGGAGTGGGCCGCACGTTGAAGGGCCGAGACTTGAGCCGGGTTCGTGATGCCGTGTGGAGCCAGACCGGGTTCGACGGTTAA

>Glyma13g27510.4   sequence type=CDS   gene model=Glyma13g27510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGGTCGAAAACTAACGACCAGCCGGAGCGAGCGCTTCTTGGGAACCTATGCTTACAGCCAAGGCTCCGCCGCCGTGAACCCGTCGGAGCTTCGGGAAGAGGATGTATGGGGCGCCGGAGATGACGCCGGCGAACGCGAGTGGGATCCACACTTCGCCGCCATGAGCAACGGCGGCGGAAGCCGGCGCCGGATTCCGCGTGACACGGATGTGCACCGGCGCGTGGGTGGGCTGTCTCTGGCTTTTGAAGCTCCGGCGAGTGGCGCGTCGCCGAGGATCGTGCACCAGTTTCGCGCGCGTGAAGAGATGGCGTCGACGCCGCGAGTGCGGCACATGGCGACGTCGGCGCCGATGAACGTGCCGGACTGGAGCAAGATACTCCGAGTCGACTCGGTCGATTCGCTGAACGACGATTACAACGACGAAGACGAATCGGAGATGGTGCCACCGCATGAGTATTTGGCGCGTAGCCAGACGATGGTGGCTAACTCGGTGTTTGAAGGAGTGGGCCGCACGTTGAAGGGCCGAGACTTGAGCCGGGTTCGTGATGCCGTGTGGAGCCAGACCGGGTTCGACGGTTAA

Predicted protein sequences of Glyma13g27510

Limit To All Plant Sequences

>Glyma13g27510.3   sequence type=predicted peptide   gene model=Glyma13g27510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGRKLTTSRSERFLGTYAYSQGSAAVNPSELREEDVWGAGDDAGEREWDPHFAAMSNGGGSRRRIPRDTDVHRRVGGLSLAFEAPASGASPRIVHQFRAREEMASTPRVRHMATSAPMNVPDWSKILRVDSVDSLNDDYNDEDESEMVPPHEYLARSQTMVANSVFEGVGRTLKGRDLSRVRDAVWSQTGFDG*

>Glyma13g27510.4   sequence type=predicted peptide   gene model=Glyma13g27510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGRKLTTSRSERFLGTYAYSQGSAAVNPSELREEDVWGAGDDAGEREWDPHFAAMSNGGGSRRRIPRDTDVHRRVGGLSLAFEAPASGASPRIVHQFRAREEMASTPRVRHMATSAPMNVPDWSKILRVDSVDSLNDDYNDEDESEMVPPHEYLARSQTMVANSVFEGVGRTLKGRDLSRVRDAVWSQTGFDG*

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